Variant report

Variant	rs9644568
Chromosome Location	chr8:19928582-19928583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1059611	0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs11570891	0.83[JPT][hapmap]
rs11989309	0.83[AMR][1000 genomes]
rs11991231	0.85[ASN][1000 genomes]
rs12678604	0.83[AMR][1000 genomes]
rs12679834	0.83[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs325	0.83[JPT][hapmap]
rs328	0.83[JPT][hapmap]
rs3735964	0.83[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs4128744	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6983430	0.83[AMR][1000 genomes]
rs7004149	0.83[AMR][1000 genomes]
rs7004158	0.83[AMR][1000 genomes]
rs7007609	0.83[AMR][1000 genomes]
rs7007797	0.83[AMR][1000 genomes]
rs7016880	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv890633	chr8:19875100-19985382	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Hypertriglyceridemia	23505323	GWAS catalog

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9644568	LPL	cis	multi-tissue	Pritchard
rs9644568	TNFRSF10D	cis	cerebellum	SCAN
rs9644568	POLR3D	cis	parietal	SCAN
rs9644568	CNOT7	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19919600-19931600	Weak transcription	Lung	lung
2	chr8:19921600-19932200	Weak transcription	Left Ventricle	heart
3	chr8:19928400-19929200	Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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