Variant report

Variant	rs9644717
Chromosome Location	chr8:9948144-9948145
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9644718	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
2	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
3	chr8:9945200-9950000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:9946800-9948200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:9947000-9948200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:9947000-9948200	Enhancers	NH-A	brain
7	chr8:9947000-9948200	Enhancers	NHEK	skin
8	chr8:9947000-9948400	Enhancers	HMEC	breast
9	chr8:9947200-9948200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:9947200-9948200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:9947200-9948200	Enhancers	NHDF-Ad	bronchial
12	chr8:9947200-9948600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:9947800-9948200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:9947800-9948200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:9947800-9948600	Enhancers	Osteobl	bone
16	chr8:9947800-9949800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:9948000-9951400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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