Variant report

Variant	rs9645826
Chromosome Location	chr12:66795230-66795231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1472313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102466	1.00[EUR][1000 genomes]
rs3960132	1.00[EUR][1000 genomes]
rs73315110	1.00[EUR][1000 genomes]
rs73329031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1051713	chr12:66745716-66889411	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv832447	chr12:66785814-66990029	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66782800-66812600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:66784200-66796000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:66786200-66801000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:66786200-66801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:66786400-66801200	Weak transcription	Placenta	Placenta
6	chr12:66786600-66803000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:66792000-66798600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:66792000-66799000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:66793000-66801800	Weak transcription	Spleen	Spleen
10	chr12:66793200-66796400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr12:66793200-66797600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr12:66793200-66798200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:66793400-66797600	Weak transcription	Brain Germinal Matrix	brain
14	chr12:66793600-66796000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:66794000-66801200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:66794200-66802800	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:66794400-66796000	Weak transcription	Fetal Brain Female	brain
18	chr12:66794600-66797400	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:66794800-66796800	Weak transcription	Fetal Brain Male	brain
20	chr12:66794800-66801000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr12:66794800-66801000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr12:66794800-66801200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr12:66794800-66801200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:66795000-66801400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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