Variant report

Variant	rs9645914
Chromosome Location	chr13:110995210-110995211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11069840	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs12428412	1.00[CHB][hapmap]
rs12859020	1.00[JPT][hapmap]
rs4771665	1.00[ASN][1000 genomes]
rs9521703	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9645914	ING1	cis	cerebellum	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110972600-111007200	Weak transcription	Gastric	stomach
2	chr13:110980200-110995400	Weak transcription	A549	lung
3	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
4	chr13:110988200-110996000	Enhancers	Right Ventricle	heart
5	chr13:110989800-110999200	Weak transcription	Pancreas	Pancrea
6	chr13:110991400-110995400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:110991400-110995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:110991600-110995400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:110991600-110995800	Weak transcription	Brain Anterior Caudate	brain
10	chr13:110992000-110999200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:110992000-111001600	Weak transcription	Brain Substantia Nigra	brain
12	chr13:110992600-110995400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr13:110992600-110995600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:110992800-110995400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:110992800-110996000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:110993000-110995400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr13:110993000-110996000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr13:110993000-110997200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:110993200-110995800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:110993400-110996000	Enhancers	Right Atrium	heart
21	chr13:110993800-111000600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:110993800-111007200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr13:110994000-110995600	Weak transcription	Colonic Mucosa	Colon
24	chr13:110994000-110995600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr13:110994000-110999800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:110994000-110999800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr13:110994000-111004400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr13:110994000-111019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr13:110994200-110995400	Weak transcription	Aorta	Aorta
30	chr13:110994200-110995800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr13:110994200-110996000	Weak transcription	Osteobl	bone
32	chr13:110994200-110996200	Enhancers	Left Ventricle	heart
33	chr13:110994200-110998000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:110994200-110999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr13:110994200-110999000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:110994200-110999200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr13:110994200-110999200	Weak transcription	HSMM	muscle
38	chr13:110994200-110999400	Weak transcription	Fetal Intestine Large	intestine
39	chr13:110994200-110999600	Weak transcription	HSMMtube	muscle
40	chr13:110994400-110995400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr13:110994400-110995400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:110994400-110995600	Enhancers	Fetal Lung	lung
43	chr13:110994400-110996200	Enhancers	NH-A	brain
44	chr13:110994400-110998600	Weak transcription	NHLF	lung
45	chr13:110994400-110998800	Weak transcription	NHDF-Ad	bronchial
46	chr13:110994400-110999400	Weak transcription	Fetal Intestine Small	intestine
47	chr13:110994400-111002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr13:110994400-111007200	Weak transcription	Fetal Kidney	kidney
49	chr13:110994600-110995600	Genic enhancers	Fetal Muscle Leg	muscle
50	chr13:110994600-110995600	Enhancers	HUVEC	blood vessel

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