Variant report

Variant	rs9648658
Chromosome Location	chr7:150528826-150528827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150526781..150530863-chr7:150531594..150534159,3	K562	blood:
2	chr7:150525562..150527080-chr7:150527872..150530321,2	K562	blood:
3	chr7:150526781..150529717-chr7:150531594..150533626,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1006581	0.83[JPT][hapmap]
rs10085672	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10231759	0.83[JPT][hapmap]
rs10236614	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10236835	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10240041	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10278673	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10280166	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10282083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282142	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282362	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11982695	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs12375203	0.82[ASN][1000 genomes]
rs12537755	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703102	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13223879	0.84[JPT][hapmap]
rs35613114	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4725368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725370	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4725371	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4725952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725953	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4725954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725957	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59575516	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62490442	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62492369	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6464109	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464110	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464112	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464113	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66561528	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946098	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946967	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6951070	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951761	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951919	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963419	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6971206	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978544	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980179	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7809861	0.83[JPT][hapmap]
rs9648659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648706	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150522400-150542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:150527400-150530200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:150527600-150529000	Enhancers	Stomach Mucosa	stomach
4	chr7:150527600-150529200	Enhancers	Fetal Intestine Small	intestine
5	chr7:150528000-150529000	Enhancers	Ovary	ovary
6	chr7:150528000-150529200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:150528200-150533400	Weak transcription	Right Atrium	heart
8	chr7:150528400-150529400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr7:150528400-150532600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:150528400-150533200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:150528400-150539200	Weak transcription	Liver	Liver
12	chr7:150528800-150529000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:150528800-150529000	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr7:150528800-150529200	Enhancers	Brain Anterior Caudate	brain
15	chr7:150528800-150529200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr7:150528800-150529200	Enhancers	Small Intestine	intestine
17	chr7:150528800-150529400	Enhancers	Brain Hippocampus Middle	brain
18	chr7:150528800-150529400	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links