Variant report

Variant	rs9649710
Chromosome Location	chr7:50322832-50322833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50316020..50318450-chr7:50322508..50325323,3	K562	blood:
2	chr7:50308921..50311728-chr7:50321396..50323207,2	K562	blood:
3	chr7:50306184..50310421-chr7:50320200..50324356,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1026422	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1026423	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10276619	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12669163	0.96[ASN][1000 genomes]
rs12718257	0.82[ASN][1000 genomes]
rs1456893	0.95[ASN][1000 genomes]
rs1456895	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1456896	0.96[ASN][1000 genomes]
rs17634369	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2124799	0.95[ASN][1000 genomes]
rs2168589	0.90[ASN][1000 genomes]
rs2168593	0.96[ASN][1000 genomes]
rs2219345	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4244229	0.96[ASN][1000 genomes]
rs4917015	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4917127	0.92[ASN][1000 genomes]
rs4917129	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4917130	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6583435	0.96[ASN][1000 genomes]
rs748374	0.92[ASN][1000 genomes]
rs921913	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs921914	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs981132	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50314600-50324800	Weak transcription	Spleen	Spleen
2	chr7:50320400-50326200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:50320800-50323400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:50320800-50325600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:50320800-50325800	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:50321800-50323600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:50321800-50323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:50321800-50323800	Weak transcription	Adipose Nuclei	Adipose
9	chr7:50321800-50324000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:50321800-50324800	Weak transcription	Placenta	Placenta
11	chr7:50322000-50323800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:50322000-50323800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:50322000-50325200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr7:50322000-50325200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr7:50322000-50325200	Enhancers	Fetal Thymus	thymus
16	chr7:50322000-50325400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr7:50322000-50325600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr7:50322000-50325600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr7:50322000-50325600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr7:50322000-50326000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr7:50322000-50326400	Enhancers	Primary B cells from cord blood	blood
22	chr7:50322000-50326400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:50322000-50326600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:50322200-50323400	Flanking Active TSS	GM12878-XiMat	blood
25	chr7:50322200-50323400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr7:50322400-50323600	Weak transcription	Dnd41	blood
27	chr7:50322400-50325400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr7:50322400-50326400	Enhancers	Primary B cells from peripheral blood	blood
29	chr7:50322600-50323400	Weak transcription	Thymus	Thymus
30	chr7:50322800-50323400	Flanking Active TSS	K562	blood
31	chr7:50322800-50325600	Enhancers	Primary T cells from cord blood	blood

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