Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091394	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112204	0.80[EUR][1000 genomes]
rs11993717	0.81[EUR][1000 genomes]
rs12545700	0.81[EUR][1000 genomes]
rs12679885	0.98[ASN][1000 genomes]
rs1819087	0.99[ASN][1000 genomes]
rs2056769	0.95[ASN][1000 genomes]
rs2405809	0.94[ASN][1000 genomes]
rs2405810	0.99[ASN][1000 genomes]
rs2897246	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2950903	0.99[ASN][1000 genomes]
rs2950904	0.99[ASN][1000 genomes]
rs2950905	1.00[ASN][1000 genomes]
rs3108622	0.99[ASN][1000 genomes]
rs3108625	0.99[ASN][1000 genomes]
rs3115003	0.99[ASN][1000 genomes]
rs3115004	0.99[ASN][1000 genomes]
rs34376566	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3744	0.81[EUR][1000 genomes]
rs4255132	0.80[EUR][1000 genomes]
rs7014149	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7831684	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35096000-35135400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:35097600-35124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:35100800-35123800	Weak transcription	Fetal Brain Female	brain
4	chr8:35101200-35120200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:35104400-35124000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:35109000-35123800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:35113000-35123600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:35113000-35123800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:35116200-35139200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:35116400-35119600	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:35116400-35120000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:35117200-35124000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:35117400-35118600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:35117400-35118600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:35117600-35118200	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr8:35117600-35118600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr8:35117600-35118600	Strong transcription	HUES64 Cell Line	embryonic stem cell

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