Variant report

Variant	rs9651053
Chromosome Location	chr1:154359411-154359412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154297622..154300482-chr1:154357910..154359752,2	K562	blood:
2	chr1:154323094..154325358-chr1:154357953..154361791,3	K562	blood:

Variant related genes	Relation type
ENSG00000143515	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11265608	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024903	0.89[ASN][1000 genomes]
rs12026876	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033701	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1205591	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1209264	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1685633	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2481065	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58548028	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703024	1.00[JPT][hapmap]
rs72696301	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72698115	0.96[EUR][1000 genomes]
rs73026617	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651036	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
4	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
5	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
6	esv3451054	chr1:154182013-154360141	Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9651053	IL6R	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154326800-154360800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:154357400-154359600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:154357400-154359600	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:154357400-154359600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:154357400-154359600	Enhancers	Fetal Thymus	thymus
6	chr1:154357600-154359600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:154357800-154359800	Flanking Active TSS	HepG2	liver
8	chr1:154358000-154359600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr1:154358400-154359600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:154358400-154360400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:154358400-154362800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:154358400-154363600	Weak transcription	Esophagus	oesophagus
13	chr1:154358600-154359600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr1:154358600-154363400	Weak transcription	NHEK	skin
15	chr1:154358600-154363600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:154358600-154364000	Weak transcription	Hela-S3	cervix
17	chr1:154358800-154359600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:154358800-154359600	Enhancers	Stomach Mucosa	stomach
19	chr1:154358800-154359600	Flanking Active TSS	K562	blood
20	chr1:154359000-154359600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
21	chr1:154359000-154359600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr1:154359000-154359600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr1:154359000-154359600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr1:154359000-154359600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr1:154359000-154359600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr1:154359000-154359600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr1:154359000-154359600	Enhancers	Lung	lung
28	chr1:154359000-154359600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr1:154359000-154359600	Enhancers	Thymus	Thymus
30	chr1:154359000-154360000	Enhancers	Primary T cells from cord blood	blood
31	chr1:154359200-154359600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:154359200-154359600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:154359200-154359600	Flanking Active TSS	Colonic Mucosa	Colon
34	chr1:154359200-154359600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr1:154359200-154359600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr1:154359200-154359600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
37	chr1:154359200-154359600	Active TSS	NHDF-Ad	bronchial
38	chr1:154359200-154360000	Enhancers	A549	lung
39	chr1:154359400-154359600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:154359400-154359600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:154359400-154359600	Enhancers	Placenta	Placenta
42	chr1:154359400-154359600	Enhancers	GM12878-XiMat	blood
43	chr1:154359400-154359600	Bivalent Enhancer	HSMMtube	muscle
44	chr1:154359400-154360400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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