Variant report

Variant	rs9651739
Chromosome Location	chr11:76167028-76167029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76159669..76162369-chr11:76163476..76167380,4	K562	blood:
2	chr11:76157054..76159059-chr11:76166172..76168326,2	K562	blood:
3	chr11:76165538..76167184-chr11:76168233..76170984,2	K562	blood:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11236751	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11236771	1.00[AMR][1000 genomes]
rs11821353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099277	1.00[AMR][1000 genomes]
rs12272612	1.00[AMR][1000 genomes]
rs12277813	1.00[AMR][1000 genomes]
rs12283862	1.00[AMR][1000 genomes]
rs12284254	1.00[AMR][1000 genomes]
rs12290864	1.00[AMR][1000 genomes]
rs7101546	1.00[AMR][1000 genomes]
rs7125404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv528623	chr11:76161389-76168219	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157200-76168400	Weak transcription	Psoas Muscle	Psoas
2	chr11:76157200-76183400	Weak transcription	Gastric	stomach
3	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
5	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
8	chr11:76157400-76169800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:76157400-76171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:76157400-76174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:76157400-76179800	Weak transcription	HSMMtube	muscle
12	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
13	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
15	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
16	chr11:76157600-76173600	Weak transcription	Brain Substantia Nigra	brain
17	chr11:76157800-76169200	Weak transcription	Brain Anterior Caudate	brain
18	chr11:76157800-76174800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:76158000-76167200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:76158000-76168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:76158000-76170000	Weak transcription	Fetal Heart	heart
22	chr11:76158000-76171400	Strong transcription	Liver	Liver
23	chr11:76158000-76171400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:76158000-76171800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:76158000-76171800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:76158000-76172000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:76158000-76172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76158000-76174800	Weak transcription	HMEC	breast
29	chr11:76158000-76177400	Strong transcription	Fetal Thymus	thymus
30	chr11:76158000-76181000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:76158200-76169200	Weak transcription	HepG2	liver
32	chr11:76158200-76179400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:76158200-76190200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:76158400-76171800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr11:76158400-76172200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:76158600-76172200	Strong transcription	Dnd41	blood
37	chr11:76158600-76172800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:76158800-76169800	Weak transcription	GM12878-XiMat	blood
39	chr11:76158800-76171000	Weak transcription	NHEK	skin
40	chr11:76159000-76172800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:76159400-76167400	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:76159800-76167800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr11:76159800-76190400	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:76160000-76178800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:76160400-76170400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr11:76160600-76168400	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:76162000-76169000	Weak transcription	Thymus	Thymus
48	chr11:76162200-76171800	Weak transcription	Fetal Intestine Small	intestine
49	chr11:76162200-76173600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:76162200-76183600	Weak transcription	Lung	lung

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