Variant report

Variant	rs9652440
Chromosome Location	chr15:41837214-41837215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr15:41836783-41837336	A549	lung:	n/a	chr15:41837007-41837023 chr15:41837181-41837190 chr15:41837008-41837022 chr15:41837007-41837023 chr15:41837004-41837025 chr15:41837007-41837023 chr15:41837007-41837023 chr15:41837008-41837022
2	EGR1	chr15:41836924-41837235	K562	blood:	n/a	n/a
3	POLR2A	chr15:41835849-41837449	HepG2	liver:	n/a	n/a
4	MXI1	chr15:41835607-41837477	SK-N-SH	brain:	n/a	n/a
5	NR3C1	chr15:41836688-41837301	A549	lung:	n/a	chr15:41837007-41837023 chr15:41837181-41837190 chr15:41837008-41837022 chr15:41837007-41837023 chr15:41837004-41837025 chr15:41837007-41837023 chr15:41837007-41837023 chr15:41837008-41837022
6	NR3C1	chr15:41836729-41837327	A549	lung:	n/a	chr15:41837007-41837023 chr15:41837181-41837190 chr15:41837008-41837022 chr15:41837007-41837023 chr15:41837004-41837025 chr15:41837007-41837023 chr15:41837007-41837023 chr15:41837008-41837022
7	NR3C1	chr15:41836772-41837238	A549	lung:	n/a	chr15:41837007-41837023 chr15:41837181-41837190 chr15:41837008-41837022 chr15:41837007-41837023 chr15:41837004-41837025 chr15:41837007-41837023 chr15:41837007-41837023 chr15:41837008-41837022

No.	Distal block	Cell Line	Cell type
1	chr15:41827251..41831779-chr15:41832424..41837409,12	K562	blood:
2	chr15:41785172..41787151-chr15:41835585..41837884,2	MCF-7	breast:
3	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
4	chr15:41784771..41788118-chr15:41836495..41840463,4	K562	blood:
5	chr15:41783980..41786928-chr15:41835398..41839034,5	K562	blood:
6	chr15:41784244..41787186-chr15:41835793..41838130,2	MCF-7	breast:
7	chr15:41835700..41837704-chr15:42118864..42120391,2	K562	blood:
8	chr15:41812182..41819156-chr15:41830894..41838104,9	K562	blood:
9	chr15:41407191..41409421-chr15:41835564..41837898,2	MCF-7	breast:

Variant related genes	Relation type
RPAP1	TF binding region
ENSG00000137825	Chromatin interaction
ENSG00000168970	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000243789	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000128908	Chromatin interaction
ENSG00000250379	Chromatin interaction

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41836000-41837400	Active TSS	Stomach Smooth Muscle	stomach
2	chr15:41836600-41837400	Enhancers	Stomach Mucosa	stomach
3	chr15:41836600-41837400	Enhancers	Spleen	Spleen
4	chr15:41836600-41839400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:41836800-41837400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:41836800-41837400	Enhancers	HMEC	breast
7	chr15:41836800-41837400	Enhancers	NHDF-Ad	bronchial
8	chr15:41836800-41837600	Enhancers	Fetal Intestine Large	intestine
9	chr15:41836800-41837600	Flanking Active TSS	Hela-S3	cervix
10	chr15:41836800-41838800	Weak transcription	Fetal Intestine Small	intestine
11	chr15:41837000-41837400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:41837000-41837400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:41837000-41837400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:41837000-41837600	Enhancers	Placenta	Placenta
15	chr15:41837000-41839000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:41837000-41839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:41837000-41839000	Weak transcription	HSMMtube	muscle
18	chr15:41837000-41839200	Weak transcription	A549	lung
19	chr15:41837000-41839200	Weak transcription	HSMM	muscle
20	chr15:41837200-41837400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:41837200-41837400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:41837200-41837400	Enhancers	Pancreas	Pancrea
23	chr15:41837200-41837400	Enhancers	Dnd41	blood
24	chr15:41837200-41837400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:41837200-41837600	Enhancers	Brain Angular Gyrus	brain
26	chr15:41837200-41837600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr15:41837200-41837600	Enhancers	Duodenum Mucosa	Duodenum
28	chr15:41837200-41837600	Enhancers	HepG2	liver
29	chr15:41837200-41837600	Enhancers	K562	blood
30	chr15:41837200-41837800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr15:41837200-41839000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:41837200-41839000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:41837200-41839000	Weak transcription	Brain Substantia Nigra	brain
34	chr15:41837200-41839000	Weak transcription	NHEK	skin
35	chr15:41837200-41839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:41837200-41839200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:41837200-41839200	Weak transcription	Adipose Nuclei	Adipose
38	chr15:41837200-41839200	Weak transcription	Osteobl	bone
39	chr15:41837200-41850000	Weak transcription	Brain Anterior Caudate	brain
40	chr15:41837200-41850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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