Variant report

Variant	rs9652488
Chromosome Location	chr15:77951241-77951242
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr15:77951071-77951568	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77947545..77949495-chr15:77949738..77952290,2	K562	blood:

Variant related genes	Relation type
ENSG00000259281	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11630768	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11633639	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11634778	0.94[ASN][1000 genomes]
rs11635239	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11638318	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11855155	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13329256	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13329323	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16969027	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2292415	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2292416	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2292417	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28374408	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28503184	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28515899	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56717248	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56941158	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60886924	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73457842	0.85[EUR][1000 genomes]
rs73457843	0.85[EUR][1000 genomes]
rs74025333	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74025334	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74025342	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74025352	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8026671	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8028788	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9806280	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9972481	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77943200-77951800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:77947000-77965200	Enhancers	Fetal Brain Male	brain
3	chr15:77947400-77951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:77948400-77952400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:77948800-77952400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:77949200-77956200	Enhancers	Fetal Brain Female	brain
7	chr15:77949400-77956800	Weak transcription	Spleen	Spleen
8	chr15:77949800-77951800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:77950000-77952400	Weak transcription	Brain Angular Gyrus	brain
10	chr15:77950400-77951400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:77951000-77952800	Enhancers	Fetal Intestine Large	intestine
12	chr15:77951000-77952800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:77951000-77957000	Enhancers	Fetal Intestine Small	intestine

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