Variant report

Variant	rs9652859
Chromosome Location	chr17:59796454-59796455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59794606..59796745-chr20:55819557..55822535,2	MCF-7	breast:
2	chr17:59794604..59797710-chr20:45988033..45991056,3	MCF-7	breast:
3	chr17:59794574..59796740-chr17:59883852..59885570,2	MCF-7	breast:
4	chr17:59487923..59489909-chr17:59793689..59797576,3	MCF-7	breast:
5	chr14:99946727..99948388-chr17:59793982..59796517,2	MCF-7	breast:
6	chr17:59795240..59797574-chr20:45979945..45981997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231119	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000090061	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000183576	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2378901	0.81[AFR][1000 genomes]
rs2378903	0.90[LWK][hapmap];1.00[MKK][hapmap]
rs4968449	0.90[LWK][hapmap];1.00[MKK][hapmap]
rs7215717	0.86[AFR][1000 genomes]
rs7342819	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59766000-59819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:59778200-59805800	Weak transcription	Thymus	Thymus
3	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
4	chr17:59784400-59815200	Weak transcription	HMEC	breast
5	chr17:59786600-59815400	Weak transcription	Fetal Thymus	thymus
6	chr17:59792000-59815200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:59793200-59803400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:59793200-59819400	Weak transcription	NH-A	brain
9	chr17:59793600-59821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:59793800-59796800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr17:59794200-59815200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr17:59794200-59819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr17:59794400-59815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:59794400-59816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
16	chr17:59794600-59807200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:59794800-59806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr17:59794800-59815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:59796200-59797400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:59796200-59797400	Weak transcription	Dnd41	blood
21	chr17:59796200-59797800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr17:59796200-59805600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr17:59796200-59805800	Weak transcription	A549	lung
24	chr17:59796200-59814400	Weak transcription	Primary hematopoietic stem cells	blood

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