Variant report

Variant	rs9653110
Chromosome Location	chr19:44528736-44528737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000267022	TF binding region
ZNF222	TF binding region
ENSG00000159882	Chromatin interaction
ENSG00000266921	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10404784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10415001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10422076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10423020	0.87[AMR][1000 genomes]
rs13345807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4622623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44515400-44529000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:44526000-44528800	Weak transcription	HSMMtube	muscle
3	chr19:44528400-44529200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr19:44528600-44528800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr19:44528600-44528800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr19:44528600-44528800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:44528600-44528800	Active TSS	Liver	Liver
8	chr19:44528600-44528800	Enhancers	Brain Anterior Caudate	brain
9	chr19:44528600-44528800	Enhancers	Dnd41	blood
10	chr19:44528600-44528800	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links