Variant report

Variant	rs9653462
Chromosome Location	chr2:98207253-98207254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr2:98205833-98207657	HepG2	liver:	n/a	chr2:98206506-98206520
2	CTCF	chr2:98207196-98207635	ECC-1	luminal epithelium:	n/a	chr2:98207475-98207496 chr2:98207416-98207437 chr2:98207473-98207491 chr2:98207419-98207427 chr2:98207474-98207490 chr2:98207414-98207432
3	POLR2A	chr2:98206967-98207428	ECC-1	luminal epithelium:	n/a	n/a
4	POLR2A	chr2:98207150-98207268	H1-hESC	embryonic stem cell:	n/a	n/a
5	MYC	chr2:98206009-98207600	K562	blood:	n/a	chr2:98206463-98206473 chr2:98206690-98206700 chr2:98207029-98207037
6	CTCF	chr2:98207226-98207549	GM19238	blood:	n/a	chr2:98207475-98207496 chr2:98207416-98207437 chr2:98207473-98207491 chr2:98207419-98207427 chr2:98207474-98207490 chr2:98207414-98207432
7	POLR2A	chr2:98207176-98207508	HepG2	liver:	n/a	n/a
8	CTCF	chr2:98207134-98207658	GM12878	blood:	n/a	chr2:98207475-98207496 chr2:98207416-98207437 chr2:98207473-98207491 chr2:98207419-98207427 chr2:98207474-98207490 chr2:98207414-98207432
9	CTCF	chr2:98207103-98207327	Fibrobl	skin:	n/a	n/a
10	HEY1	chr2:98205876-98207375	K562	blood:	n/a	chr2:98207206-98207215 chr2:98207186-98207201 chr2:98206456-98206471 chr2:98206874-98206889 chr2:98206922-98206937 chr2:98206458-98206473
11	CTCF	chr2:98207090-98207614	GM10266	blood:	n/a	chr2:98207475-98207496 chr2:98207416-98207437 chr2:98207473-98207491 chr2:98207419-98207427 chr2:98207474-98207490 chr2:98207414-98207432
12	HEY1	chr2:98206024-98207265	HepG2	liver:	n/a	chr2:98207206-98207215 chr2:98207186-98207201 chr2:98206456-98206471 chr2:98206874-98206889 chr2:98206922-98206937 chr2:98206458-98206473
13	SIN3AK20	chr2:98207013-98207546	A549	lung:	n/a	n/a
14	HA-E2F1	chr2:98206240-98207330	Hela-S3	cervix:	n/a	chr2:98206915-98206925 chr2:98206770-98206780
15	POLR2A	chr2:98206060-98207396	A549	lung:	n/a	n/a
16	TCF3	chr2:98206238-98207379	GM12878	blood:	n/a	n/a
17	CTCF	chr2:98207115-98207326	GM12892	blood:	n/a	n/a
18	POLR2A	chr2:98206061-98207350	A549	lung:	n/a	n/a
19	ZNF143	chr2:98207152-98207547	Hela-S3	cervix:	n/a	chr2:98207208-98207226
20	POLR2A	chr2:98205984-98207471	GM19099	blood:	n/a	n/a
21	POLR2A	chr2:98205863-98207506	SK-N-MC	brain:	n/a	n/a
22	CTCF	chr2:98207202-98207631	T-47D	breast:	n/a	chr2:98207475-98207496 chr2:98207416-98207437 chr2:98207473-98207491 chr2:98207419-98207427 chr2:98207474-98207490 chr2:98207414-98207432
23	POLR2A	chr2:98207051-98207533	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr2:98207044-98207309	MCF-7	breast:	n/a	n/a
25	POLR2A	chr2:98205936-98207322	Gliobla	brain:	n/a	n/a
26	CTCF	chr2:98207214-98207307	MCF-7	breast:	n/a	n/a
27	ZNF143	chr2:98207221-98207648	GM12878	blood:	n/a	n/a
28	REST	chr2:98206172-98207292	PFSK-1	brain:	n/a	n/a
29	RUNX3	chr2:98207169-98207567	GM12878	blood:	n/a	n/a
30	RAD21	chr2:98207097-98207563	A549	lung:	n/a	chr2:98207417-98207424 chr2:98207415-98207434 chr2:98207474-98207493
31	IRF4	chr2:98206093-98207691	GM12878	blood:	n/a	n/a
32	POLR2A	chr2:98206998-98207648	HUVEC	blood vessel:	n/a	n/a
33	RAD21	chr2:98206950-98207774	SK-N-SH	brain:	n/a	chr2:98207417-98207424 chr2:98207002-98207016 chr2:98207415-98207434 chr2:98207474-98207493
34	MTA3	chr2:98207024-98207599	GM12878	blood:	n/a	n/a
35	MAX	chr2:98207152-98207454	H1-hESC	embryonic stem cell:	n/a	n/a
36	IRF4	chr2:98206987-98207602	GM12878	blood:	n/a	n/a
37	MAX	chr2:98207057-98207471	NB4	blood:	n/a	n/a
38	POLR2A	chr2:98205823-98207686	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr2:98206055-98207333	HepG2	liver:	n/a	n/a
40	REST	chr2:98206936-98207577	H1-neurons	neurons:	n/a	n/a
41	SP1	chr2:98207206-98207660	HepG2	liver:	n/a	n/a
42	MAX	chr2:98207250-98207524	GM12878	blood:	n/a	n/a
43	CTCF	chr2:98207120-98207270	GM12875	blood:	n/a	n/a
44	CTCF	chr2:98207190-98207655	H1-hESC	embryonic stem cell:	n/a	chr2:98207475-98207496 chr2:98207416-98207437 chr2:98207473-98207491 chr2:98207419-98207427 chr2:98207474-98207490 chr2:98207414-98207432
45	CTCF	chr2:98206227-98207748	K562	blood:	n/a	chr2:98207475-98207496 chr2:98206933-98206946 chr2:98207416-98207437 chr2:98207473-98207491 chr2:98206828-98206841 chr2:98207419-98207427 chr2:98207474-98207490 chr2:98207414-98207432
46	POLR2A	chr2:98205807-98207486	GM12892	blood:	n/a	n/a
47	MXI1	chr2:98206957-98207753	IMR90	lung:	n/a	n/a
48	SPI1	chr2:98207132-98207534	GM12878	blood:	n/a	n/a
49	POLR2A	chr2:98206127-98207330	H1-hESC	embryonic stem cell:	n/a	n/a
50	FOXM1	chr2:98207104-98207679	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:98206697..98208046-chr2:98313463..98314373,16	MCF-7	breast:
2	chr2:98206110..98207769-chr2:98279652..98281540,2	K562	blood:
3	chr2:98207000..98207853-chr2:219712161..219712679,2	MCF-7	breast:
4	chr2:98206838..98208035-chr2:98280277..98281403,5	MCF-7	breast:
5	chr2:98205848..98207835-chr2:98279004..98283186,3	MCF-7	breast:
6	chr2:98207030..98207891-chr2:98316572..98317381,2	K562	blood:
7	chr2:98206925..98207973-chr2:98313358..98314529,26	K562	blood:
8	chr2:98204043..98208769-chr2:98260858..98263741,4	MCF-7	breast:
9	chr2:98207043..98207962-chr2:98341661..98342410,2	MCF-7	breast:
10	chr2:98207030..98207867-chr2:98316437..98317264,2	MCF-7	breast:

Variant related genes	Relation type
ANKRD36B	TF binding region
ENSG00000135940	Chromatin interaction
ENSG00000115073	Chromatin interaction
ENSG00000228486	Chromatin interaction
ENSG00000201806	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10177127	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10181934	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10182018	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10190971	0.84[AMR][1000 genomes]
rs10191071	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10192821	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10195004	0.84[AMR][1000 genomes]
rs10195495	0.85[AMR][1000 genomes]
rs10195500	0.84[AMR][1000 genomes]
rs10199389	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10209395	0.81[AMR][1000 genomes]
rs11123815	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11674250	0.84[AMR][1000 genomes]
rs11683920	0.91[AMR][1000 genomes]
rs11684898	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11688407	0.86[ASN][1000 genomes]
rs11688491	0.84[AMR][1000 genomes]
rs11688544	0.80[AMR][1000 genomes]
rs11690658	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12712050	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12990187	0.93[AMR][1000 genomes]
rs12990858	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12993579	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12994535	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13000078	0.93[AMR][1000 genomes]
rs13001728	0.83[AMR][1000 genomes]
rs13005018	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13009263	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13017744	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13027550	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13033336	0.91[AMR][1000 genomes]
rs13034553	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13034764	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13395166	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13417653	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13427163	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1814505	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1868445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1972985	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28415903	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34131105	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35904593	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3906948	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3925996	0.82[AMR][1000 genomes]
rs4069526	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4086889	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4434044	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56226039	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59330394	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62154337	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6542895	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6718109	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6725692	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6733734	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6742337	0.83[AMR][1000 genomes]
rs6744616	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6745810	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6750205	0.85[ASN][1000 genomes]
rs6756674	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7577439	0.97[AMR][1000 genomes]
rs7579570	0.97[AMR][1000 genomes]
rs7583589	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9677078	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9677087	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9677528	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9678893	0.84[AMR][1000 genomes]
rs9679287	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9679293	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757819	chr2:97571109-98336507	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
2	esv2759077	chr2:97571109-98336507	Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
3	nsv431402	chr2:97669032-98281634	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv535831	chr2:97671335-98270990	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	esv2752937	chr2:97708611-98269110	Genic enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	esv2756939	chr2:97708611-98274527	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv2763630	chr2:97731133-98279050	Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv431413	chr2:97753585-98274527	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv1004229	chr2:97758953-98225437	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv522486	chr2:97768178-98265491	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
11	nsv869602	chr2:97820572-98263438	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
12	nsv874695	chr2:97845100-98253816	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	esv1838312	chr2:97852832-98240470	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv1005903	chr2:97872625-98264679	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv999118	chr2:97886322-98264679	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv1011958	chr2:97886322-98269110	Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv1001249	chr2:97972600-98274527	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv1005846	chr2:97972600-98281634	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
19	nsv1010905	chr2:98013814-98269110	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
20	nsv1003384	chr2:98013814-98270884	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
21	nsv1010167	chr2:98013814-98273619	Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
22	nsv999627	chr2:98013814-98274527	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv1009263	chr2:98013814-98281634	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
24	nsv1004566	chr2:98146258-98216777	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
25	nsv1010893	chr2:98146258-98225437	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
26	esv1836995	chr2:98155850-98240470	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
27	esv1838952	chr2:98155850-98240470	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
28	esv1842036	chr2:98155850-98257451	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
29	esv1848400	chr2:98168562-98240909	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
30	esv1820988	chr2:98168868-98240470	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
31	esv1829350	chr2:98170405-98315611	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
32	esv3342589	chr2:98205045-98208093	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs9653462	ANKRD36B	cis	lung	GTEx
rs9653462	ANKRD36B	cis	Nerve Tibial	GTEx
rs9653462	ANKRD36B	cis	Stomach	GTEx
rs9653462	ANKRD36B	cis	Esophagus Mucosa	GTEx
rs9653462	ANKRD36B	cis	Artery Tibial	GTEx
rs9653462	ANKRD36B	cis	Skin Sun Exposed Lower leg	GTEx
rs9653462	AC017099.3	cis	Muscle Skeletal	GTEx
rs9653462	ANKRD36B	cis	Thyroid	GTEx
rs9653462	ANKRD36B	cis	Adipose Subcutaneous	GTEx
rs9653462	ANKRD36B	cis	Artery Aorta	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98205600-98207400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:98205600-98207400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr2:98205600-98207400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:98205600-98207400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:98205600-98207400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr2:98205600-98207400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:98205600-98207400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr2:98205600-98207400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:98205600-98207400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:98205600-98207400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:98205600-98207400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:98205600-98207400	Active TSS	Aorta	Aorta
13	chr2:98205600-98207400	Active TSS	Brain Germinal Matrix	brain
14	chr2:98205600-98207400	Active TSS	Fetal Stomach	stomach
15	chr2:98205600-98207400	Active TSS	Ovary	ovary
16	chr2:98205600-98207400	Active TSS	Right Atrium	heart
17	chr2:98205600-98207400	Active TSS	Thymus	Thymus
18	chr2:98205600-98207600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:98205600-98207600	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr2:98205600-98207600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:98205600-98207600	Active TSS	Fetal Brain Female	brain
22	chr2:98205600-98207600	Active TSS	Dnd41	blood
23	chr2:98205600-98207600	Active TSS	Monocytes-CD14+_RO01746	blood
24	chr2:98205800-98207400	Active TSS	H1 Cell Line	embryonic stem cell
25	chr2:98205800-98207400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:98205800-98207400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:98205800-98207400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:98205800-98207400	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr2:98205800-98207400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr2:98205800-98207400	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr2:98205800-98207400	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr2:98205800-98207400	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr2:98205800-98207400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:98205800-98207400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:98205800-98207400	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr2:98205800-98207400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:98205800-98207400	Active TSS	Primary B cells from peripheral blood	blood
38	chr2:98205800-98207400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr2:98205800-98207400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:98205800-98207400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr2:98205800-98207400	Active TSS	Muscle Satellite Cultured Cells	--
42	chr2:98205800-98207400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr2:98205800-98207400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr2:98205800-98207400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:98205800-98207400	Active TSS	Brain Angular Gyrus	brain
46	chr2:98205800-98207400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr2:98205800-98207400	Active TSS	Brain Substantia Nigra	brain
48	chr2:98205800-98207400	Active TSS	Colonic Mucosa	Colon
49	chr2:98205800-98207400	Active TSS	Duodenum Mucosa	Duodenum
50	chr2:98205800-98207400	Active TSS	Duodenum Smooth Muscle	Duodenum

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