Variant report

Variant	rs9654328
Chromosome Location	chr4:54431179-54431180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10007397	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031491	0.91[AFR][1000 genomes]
rs17083038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57991612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54412200-54442400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:54416000-54438000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:54420000-54437600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:54421400-54437600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:54421600-54437000	Weak transcription	Pancreas	Pancrea
6	chr4:54425200-54436800	Weak transcription	Esophagus	oesophagus
7	chr4:54425200-54437000	Weak transcription	Fetal Intestine Large	intestine
8	chr4:54425200-54437600	Weak transcription	Placenta	Placenta
9	chr4:54425200-54457400	Weak transcription	Right Atrium	heart
10	chr4:54425400-54437600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:54425400-54439200	Weak transcription	Liver	Liver
12	chr4:54428800-54436600	Weak transcription	Fetal Stomach	stomach
13	chr4:54430400-54431200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:54430400-54437400	Weak transcription	Gastric	stomach
15	chr4:54430600-54431200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr4:54430600-54431200	Active TSS	H9 Cell Line	embryonic stem cell
17	chr4:54430600-54431200	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr4:54430600-54437000	Weak transcription	Fetal Intestine Small	intestine
19	chr4:54430800-54431200	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr4:54430800-54431200	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr4:54430800-54431200	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr4:54430800-54431200	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr4:54430800-54441600	Weak transcription	Stomach Mucosa	stomach
24	chr4:54431000-54431200	Active TSS	H1 Cell Line	embryonic stem cell
25	chr4:54431000-54438800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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