Variant report

Variant	rs9655269
Chromosome Location	chr7:3338121-3338122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10224159	0.81[CHB][hapmap]
rs10232765	0.81[CHB][hapmap]
rs10235815	0.80[CHB][hapmap]
rs10249981	0.80[CHB][hapmap]
rs10262464	0.81[CHB][hapmap]
rs10270365	0.81[CHB][hapmap]
rs10277545	0.81[CHB][hapmap]
rs10278205	0.81[CHB][hapmap]
rs10281401	0.81[CHB][hapmap]
rs10454314	0.81[CHB][hapmap]
rs10499327	0.80[CHB][hapmap]
rs10807839	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs11761186	0.81[CHB][hapmap]
rs11764387	0.81[CHB][hapmap]
rs11771359	0.81[CHB][hapmap]
rs11979128	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs11979842	0.86[CHB][hapmap]
rs11981092	0.81[CHB][hapmap]
rs12532848	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12535065	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs12537420	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs12667184	0.81[CHB][hapmap]
rs12700808	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12700827	0.81[CHB][hapmap]
rs1525557	0.82[CHB][hapmap]
rs1554497	0.81[CHB][hapmap]
rs1554498	0.81[CHB][hapmap]
rs1554502	0.81[CHB][hapmap]
rs1915983	0.81[CHB][hapmap]
rs2140114	0.81[CHB][hapmap]
rs4236323	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4236326	0.81[CHB][hapmap]
rs4286835	0.81[CHB][hapmap]
rs4343998	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs4416733	0.85[CHB][hapmap]
rs4722695	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs4722705	0.81[CEU][hapmap]
rs4722735	0.81[CHB][hapmap]
rs6461984	0.86[JPT][hapmap]
rs6462040	0.81[CHB][hapmap]
rs6462068	0.81[CHB][hapmap]
rs6462071	0.80[CHB][hapmap]
rs6946678	0.81[CHB][hapmap]
rs6968665	0.81[CHB][hapmap]
rs6978391	0.81[CHB][hapmap]
rs7457935	0.85[CHB][hapmap]
rs7784497	0.81[CHB][hapmap]
rs7794534	0.81[CHB][hapmap]
rs7798141	0.80[CHB][hapmap]
rs939912	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464264	chr7:3194156-3349625	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv605880	chr7:3194156-3349625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1023127	chr7:3216344-3466223	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1019515	chr7:3300048-3479972	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv887324	chr7:3308195-3400105	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv1803572	chr7:3327994-3341589	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv605885	chr7:3337081-3340551	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3334800-3338400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:3334800-3339600	Weak transcription	Pancreas	Pancrea
3	chr7:3335000-3340000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:3337000-3338400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:3337600-3339800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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