Variant report

Variant	rs9655490
Chromosome Location	chr7:6017523-6017524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3094962	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
2	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
3	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
4	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
5	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
6	nsv1034215	chr7:5748982-6056619	Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
7	nsv1016690	chr7:5749222-6056619	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
8	nsv1027679	chr7:5760731-6056619	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
9	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
10	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
11	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
12	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
13	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
14	nsv433017	chr7:5853557-6045391	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1017061	chr7:5885326-6026706	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv830894	chr7:5889658-6072215	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
17	nsv1034916	chr7:5934780-6158970	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
18	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
19	nsv970789	chr7:5958445-6027048	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv8037	chr7:6010076-6018230	Weak transcription Strong transcription Active TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6010200-6018400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:6010200-6018600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:6010200-6021200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:6010200-6026600	Weak transcription	Lung	lung
5	chr7:6010200-6026800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:6010400-6026200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:6010400-6026600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:6010400-6028600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:6010400-6048000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:6010600-6018800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:6011400-6026600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:6012000-6017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:6012400-6028800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:6013000-6017600	Weak transcription	Adipose Nuclei	Adipose
15	chr7:6014600-6027200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:6015000-6017600	Weak transcription	Fetal Intestine Small	intestine
17	chr7:6015000-6026400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:6015200-6018000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:6015200-6026600	Weak transcription	Spleen	Spleen
20	chr7:6015200-6028600	Weak transcription	Gastric	stomach
21	chr7:6015400-6017600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:6015400-6023600	Weak transcription	Dnd41	blood
23	chr7:6015600-6026200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:6015600-6026600	Weak transcription	Brain Germinal Matrix	brain
25	chr7:6015800-6026600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:6015800-6033600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:6016000-6018200	Weak transcription	Fetal Thymus	thymus
28	chr7:6016000-6019400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr7:6016000-6019600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:6016000-6026400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr7:6016000-6028600	Weak transcription	Brain Substantia Nigra	brain
32	chr7:6016200-6017800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:6016200-6021400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr7:6016200-6026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:6016200-6026400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr7:6016200-6026400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr7:6016200-6026400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:6016200-6026400	Weak transcription	Placenta	Placenta
39	chr7:6016200-6026400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr7:6016200-6026600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:6016200-6026800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr7:6016200-6027800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:6016200-6028800	Weak transcription	Fetal Lung	lung
44	chr7:6016200-6029400	Weak transcription	A549	lung
45	chr7:6016200-6029400	Weak transcription	Hela-S3	cervix
46	chr7:6016200-6047600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr7:6016400-6018000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:6016400-6026400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:6016600-6026600	Weak transcription	Ovary	ovary
50	chr7:6016600-6033800	Weak transcription	GM12878-XiMat	blood

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