Variant report

Variant	rs9656068
Chromosome Location	chr7:101462716-101462717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101462493..101465700-chr7:101703860..101705566,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10232848	0.86[AFR][1000 genomes]
rs10257848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271358	0.86[AFR][1000 genomes]
rs10272452	0.86[AFR][1000 genomes]
rs10273927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944983	0.81[AFR][1000 genomes]
rs6945158	0.84[AFR][1000 genomes]
rs73712556	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv824243	chr7:101445202-101479651	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv824244	chr7:101452564-101464341	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
10	nsv521041	chr7:101458144-101496391	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101461000-101462800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr7:101461200-101462800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:101461200-101464600	Enhancers	Fetal Heart	heart
4	chr7:101461200-101466400	Weak transcription	Pancreas	Pancrea
5	chr7:101461200-101466800	Weak transcription	Brain Substantia Nigra	brain
6	chr7:101461200-101468600	Weak transcription	Spleen	Spleen
7	chr7:101461200-101469800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:101461200-101471800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:101461200-101475200	Weak transcription	Esophagus	oesophagus
10	chr7:101461200-101475400	Weak transcription	Colonic Mucosa	Colon
11	chr7:101461200-101475400	Weak transcription	Gastric	stomach
12	chr7:101461200-101486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:101461400-101463000	Active TSS	Stomach Smooth Muscle	stomach
14	chr7:101461400-101463400	Enhancers	Brain Germinal Matrix	brain
15	chr7:101461400-101463400	Enhancers	Rectal Smooth Muscle	rectum
16	chr7:101461400-101463800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:101461400-101463800	Enhancers	NHEK	skin
18	chr7:101461400-101465400	Weak transcription	Psoas Muscle	Psoas
19	chr7:101461400-101466400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:101461400-101468400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:101461400-101468600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:101461400-101468600	Weak transcription	Ovary	ovary
23	chr7:101461400-101470600	Weak transcription	NHLF	lung
24	chr7:101461400-101471400	Weak transcription	Primary T cells from cord blood	blood
25	chr7:101461400-101473000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:101461600-101462800	Enhancers	Liver	Liver
27	chr7:101461600-101463000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr7:101461600-101463400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr7:101461600-101464400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:101461600-101464400	Enhancers	Placenta	Placenta
31	chr7:101461600-101464800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr7:101461600-101465600	Weak transcription	Fetal Brain Female	brain
33	chr7:101461600-101466600	Weak transcription	HSMM	muscle
34	chr7:101461600-101469800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:101461800-101462800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr7:101461800-101462800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:101461800-101462800	Enhancers	Fetal Intestine Small	intestine
38	chr7:101461800-101462800	Enhancers	Left Ventricle	heart
39	chr7:101461800-101463000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:101461800-101463600	Enhancers	Fetal Lung	lung
41	chr7:101461800-101464200	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr7:101461800-101464200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:101461800-101464400	Enhancers	Placenta Amnion	Placenta Amnion
44	chr7:101461800-101477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:101461800-101489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:101462000-101463200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:101462000-101463200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:101462000-101463200	Enhancers	Adipose Nuclei	Adipose
49	chr7:101462000-101463200	Enhancers	Thymus	Thymus
50	chr7:101462000-101463600	Enhancers	Primary hematopoietic stem cells	blood

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