Variant report

Variant	rs9656387
Chromosome Location	chr7:129501426-129501427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129501152..129503264-chr7:129513398..129515924,2	K562	blood:
2	chr7:129500721..129502707-chr7:129502747..129505225,2	K562	blood:
3	chr7:129493067..129496024-chr7:129500943..129503078,3	K562	blood:
4	chr7:129493067..129496024-chr7:129500943..129503078,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10216153	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10246707	0.94[YRI][hapmap]
rs10249037	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs10273782	0.95[YRI][hapmap]
rs1046691	0.94[YRI][hapmap]
rs1471876	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1486831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17162050	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs2631603	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2727466	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2727507	1.00[JPT][hapmap]
rs28473687	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55682483	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57314877	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62491518	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6959075	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7783328	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7789191	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9656386	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129475000-129534800	Weak transcription	Colonic Mucosa	Colon
2	chr7:129479400-129543600	Weak transcription	Thymus	Thymus
3	chr7:129481400-129510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:129484200-129503000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:129485400-129503800	Weak transcription	Lung	lung
6	chr7:129485600-129502400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:129486400-129502400	Weak transcription	Esophagus	oesophagus
8	chr7:129486400-129505400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:129487200-129502400	Weak transcription	Ovary	ovary
10	chr7:129491600-129510000	Weak transcription	Fetal Intestine Large	intestine
11	chr7:129491800-129502000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:129492000-129509200	Weak transcription	Fetal Intestine Small	intestine
13	chr7:129492200-129501800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:129492200-129502400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:129492600-129502400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:129493800-129502400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:129493800-129502400	Weak transcription	HSMMtube	muscle
18	chr7:129493800-129510400	Weak transcription	Brain Germinal Matrix	brain
19	chr7:129494400-129502200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr7:129494400-129502400	Weak transcription	Brain Angular Gyrus	brain
21	chr7:129494400-129502400	Weak transcription	Gastric	stomach
22	chr7:129494400-129518800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:129495000-129502000	Weak transcription	Fetal Kidney	kidney
24	chr7:129495400-129510400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr7:129495600-129502400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:129495600-129517000	Weak transcription	Fetal Lung	lung
27	chr7:129496200-129505600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:129496200-129509400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr7:129496400-129520400	Weak transcription	Fetal Brain Female	brain
30	chr7:129496800-129502200	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:129496800-129502600	Weak transcription	Fetal Stomach	stomach
32	chr7:129496800-129504000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:129496800-129509600	Weak transcription	HepG2	liver
34	chr7:129496800-129510200	Weak transcription	Fetal Thymus	thymus
35	chr7:129497000-129503200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:129497000-129503800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:129497000-129513400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:129497000-129515800	Weak transcription	Placenta	Placenta
39	chr7:129497000-129536800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:129497200-129511200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:129497400-129503000	Weak transcription	Hela-S3	cervix
42	chr7:129497600-129502200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:129497800-129503000	Enhancers	Primary hematopoietic stem cells	blood
44	chr7:129497800-129505000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:129498000-129502000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:129498000-129502400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:129498000-129503800	Weak transcription	HSMM	muscle
48	chr7:129498200-129501600	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr7:129498200-129507200	Enhancers	Adipose Nuclei	Adipose
50	chr7:129498400-129503200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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