Variant report

Variant	rs9656588
Chromosome Location	chr7:50306780-50306781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50306184..50310421-chr7:50320200..50324356,4	K562	blood:
2	chr7:50306288..50308049-chr7:50308431..50310072,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10276619	0.98[ASN][1000 genomes]
rs12669163	0.83[ASN][1000 genomes]
rs12718257	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1456893	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1456895	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1456896	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2124799	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2168593	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244229	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4917127	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6583435	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs748374	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs921913	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs921914	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs981132	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50301800-50310000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:50305000-50307800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr7:50305200-50310400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:50305400-50307800	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr7:50305600-50306800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:50305600-50307000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:50305600-50307200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:50305600-50307600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr7:50305600-50307600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr7:50305600-50307600	Flanking Active TSS	Fetal Thymus	thymus
11	chr7:50305600-50308200	Enhancers	Spleen	Spleen
12	chr7:50305600-50308600	Flanking Active TSS	Dnd41	blood
13	chr7:50305800-50306800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr7:50305800-50307000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:50305800-50307400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr7:50305800-50307400	Enhancers	Colonic Mucosa	Colon
17	chr7:50305800-50307400	Flanking Active TSS	Thymus	Thymus
18	chr7:50305800-50307600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:50306000-50307400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr7:50306000-50307600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:50306200-50306800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:50306200-50307000	Flanking Active TSS	K562	blood
23	chr7:50306200-50307200	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr7:50306200-50307400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:50306200-50307400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:50306200-50307400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr7:50306200-50307800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr7:50306200-50309400	Flanking Active TSS	GM12878-XiMat	blood
29	chr7:50306400-50307000	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr7:50306400-50307000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:50306400-50307600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:50306400-50307600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr7:50306400-50308200	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr7:50306600-50306800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:50306600-50306800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr7:50306600-50307000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr7:50306600-50307000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr7:50306600-50307000	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr7:50306600-50307000	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr7:50306600-50307600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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