Variant report

Variant	rs9656746
Chromosome Location	chr8:35345114-35345115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10099855	0.86[EUR][1000 genomes]
rs10102863	0.86[EUR][1000 genomes]
rs10111986	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10112860	0.86[EUR][1000 genomes]
rs10216851	0.86[EUR][1000 genomes]
rs10503980	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12334629	0.86[EUR][1000 genomes]
rs12334687	0.86[EUR][1000 genomes]
rs12541423	0.84[EUR][1000 genomes]
rs12544168	0.84[EUR][1000 genomes]
rs12544701	0.86[EUR][1000 genomes]
rs12545517	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12546786	0.86[EUR][1000 genomes]
rs12550037	0.84[EUR][1000 genomes]
rs1371150	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1439149	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1439150	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1439159	0.86[EUR][1000 genomes]
rs16884019	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16884041	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16884099	0.81[EUR][1000 genomes]
rs16884109	0.81[EUR][1000 genomes]
rs1837346	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1837348	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1992251	0.82[EUR][1000 genomes]
rs1992252	0.82[EUR][1000 genomes]
rs2053340	0.84[EUR][1000 genomes]
rs2053342	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35827990	0.85[EUR][1000 genomes]
rs41360948	0.84[EUR][1000 genomes]
rs41409549	0.85[EUR][1000 genomes]
rs4237083	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4237084	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4302835	0.82[EUR][1000 genomes]
rs4361760	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4389936	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4481589	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4529455	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4577954	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4579522	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4739409	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4739412	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58417870	0.82[EUR][1000 genomes]
rs59091238	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6988474	0.86[EUR][1000 genomes]
rs6990960	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6991528	0.86[EUR][1000 genomes]
rs6992105	0.84[EUR][1000 genomes]
rs7001739	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7002810	0.84[EUR][1000 genomes]
rs7002972	0.84[EUR][1000 genomes]
rs7011885	0.84[EUR][1000 genomes]
rs73571880	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7829642	0.84[EUR][1000 genomes]
rs7845667	0.82[EUR][1000 genomes]
rs953345	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs953346	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs953347	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35343000-35345200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:35343200-35346400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:35343600-35345600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:35343600-35346400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:35343600-35350400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:35343800-35346400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:35344000-35345400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:35344000-35345400	Enhancers	NHLF	lung
9	chr8:35344000-35346000	Enhancers	NH-A	brain
10	chr8:35344200-35345200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:35344200-35345200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:35344200-35345400	Enhancers	HMEC	breast
13	chr8:35344200-35345400	Enhancers	NHEK	skin
14	chr8:35344200-35345400	Enhancers	Osteobl	bone
15	chr8:35344200-35345800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:35344200-35346000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr8:35344400-35345200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:35344400-35345200	Enhancers	NHDF-Ad	bronchial
19	chr8:35344400-35345400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:35344400-35345400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:35344400-35345400	Enhancers	HSMM	muscle
22	chr8:35344400-35345800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:35344400-35346000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr8:35344400-35346400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:35344400-35346400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr8:35344400-35346400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr8:35344600-35345600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr8:35344800-35345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:35345000-35345400	Enhancers	Muscle Satellite Cultured Cells	--

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