Variant report

Variant	rs9656782
Chromosome Location	chr8:99077250-99077251
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99058431..99061184-chr8:99077078..99079157,2	K562	blood:

Variant related genes	Relation type
ENSG00000156482	Chromatin interaction
ENSG00000252755	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10087420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10092558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28669193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv465745	chr8:99061992-99116201	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv611805	chr8:99061992-99116201	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99076200-99077400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr8:99076200-99077400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
3	chr8:99076200-99077600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
4	chr8:99076200-99077600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr8:99076200-99077600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
6	chr8:99076200-99077600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:99076200-99077600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:99076200-99077600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
9	chr8:99076200-99077800	Active TSS	Brain Anterior Caudate	brain
10	chr8:99076200-99078000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr8:99076200-99078200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr8:99076200-99079400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr8:99076400-99077400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr8:99076400-99077400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:99076400-99077400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:99076400-99077400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
17	chr8:99076400-99077400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
18	chr8:99076400-99077400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
19	chr8:99076400-99077400	Bivalent/Poised TSS	Fetal Kidney	kidney
20	chr8:99076400-99077400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
21	chr8:99076400-99077400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
22	chr8:99076400-99077400	Active TSS	HSMM	muscle
23	chr8:99076400-99077400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
24	chr8:99076400-99077600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr8:99076400-99077600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr8:99076400-99077600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:99076400-99077600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:99076400-99077600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:99076400-99077600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:99076400-99077600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:99076400-99077600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:99076400-99077600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
33	chr8:99076400-99077600	Flanking Active TSS	Liver	Liver
34	chr8:99076400-99077600	Active TSS	Brain Angular Gyrus	brain
35	chr8:99076400-99077600	Active TSS	Brain Cingulate Gyrus	brain
36	chr8:99076400-99077600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:99076400-99077600	Active TSS	Gastric	stomach
38	chr8:99076400-99077600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
39	chr8:99076400-99077800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
40	chr8:99076400-99078000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:99076600-99077400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr8:99076600-99077400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr8:99076600-99077400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
44	chr8:99076600-99077400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr8:99076600-99077400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
46	chr8:99076600-99077400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:99076600-99077400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
48	chr8:99076600-99077400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
49	chr8:99076600-99077400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr8:99076600-99077400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

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