Variant report

Variant	rs9656979
Chromosome Location	chr8:130664407-130664408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11777981	0.95[ASN][1000 genomes]
rs4333553	0.87[ASN][1000 genomes]
rs4377928	0.87[GIH][hapmap];0.86[JPT][hapmap]
rs4733554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4733718	0.86[JPT][hapmap]
rs58140604	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6980842	0.95[ASN][1000 genomes]
rs6989425	0.87[GIH][hapmap];0.86[JPT][hapmap]
rs7007845	0.87[GIH][hapmap];0.86[JPT][hapmap]
rs7017051	0.87[ASN][1000 genomes]
rs7835737	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130662200-130667200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130664400-130665600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:130664400-130667600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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