Variant report

Variant	rs9658074
Chromosome Location	chr6:35316131-35316132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
2	chr6:35314045..35316677-chr6:35329976..35332837,2	K562	blood:
3	chr6:35310212..35313058-chr6:35313527..35317832,4	MCF-7	breast:
4	chr6:35313773..35316682-chr6:35327162..35330055,2	MCF-7	breast:
5	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11966486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868687	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1883321	1.00[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899724	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6907223	0.84[AFR][1000 genomes]
rs6917127	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6942084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9658086	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658152	0.85[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35316200	Weak transcription	Pancreas	Pancrea
2	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35311600-35316200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:35311600-35327600	Weak transcription	A549	lung
10	chr6:35311800-35316600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:35311800-35318400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
14	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
15	chr6:35312000-35318400	Genic enhancers	Primary B cells from peripheral blood	blood
16	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
17	chr6:35312200-35316200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:35312200-35318200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
20	chr6:35312400-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:35312600-35316800	Strong transcription	NHEK	skin
22	chr6:35312600-35317600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
24	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
25	chr6:35312800-35316200	Weak transcription	Gastric	stomach
26	chr6:35312800-35318000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
28	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
29	chr6:35313000-35317400	Strong transcription	NH-A	brain
30	chr6:35313000-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:35313000-35317800	Strong transcription	Left Ventricle	heart
32	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
33	chr6:35313200-35316200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:35313200-35316400	Strong transcription	Rectal Smooth Muscle	rectum
35	chr6:35313200-35317400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:35313200-35317400	Strong transcription	Thymus	Thymus
37	chr6:35313200-35317600	Strong transcription	NHLF	lung
38	chr6:35313200-35318000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:35313200-35318200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:35313200-35320400	Weak transcription	Fetal Kidney	kidney
41	chr6:35313400-35317400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:35313400-35317400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr6:35313400-35317400	Strong transcription	Stomach Smooth Muscle	stomach
44	chr6:35313400-35317600	Strong transcription	Osteobl	bone
45	chr6:35313600-35317400	Strong transcription	Brain Hippocampus Middle	brain
46	chr6:35313800-35317400	Strong transcription	HepG2	liver
47	chr6:35313800-35325200	Strong transcription	Liver	Liver
48	chr6:35314000-35316800	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:35314000-35317600	Strong transcription	Fetal Lung	lung
50	chr6:35314000-35325800	Strong transcription	Adipose Nuclei	Adipose

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