Variant report

Variant	rs9658259
Chromosome Location	chr12:117788109-117788110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16947485	1.00[EUR][1000 genomes]
rs3782214	1.00[EUR][1000 genomes]
rs57719099	1.00[EUR][1000 genomes]
rs58264841	1.00[EUR][1000 genomes]
rs58471203	1.00[EUR][1000 genomes]
rs59689997	1.00[EUR][1000 genomes]
rs60330472	1.00[EUR][1000 genomes]
rs60346882	1.00[EUR][1000 genomes]
rs9658280	1.00[EUR][1000 genomes]
rs9658284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455724	chr12:117786105-117845806	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv560385	chr12:117786105-117845806	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117771600-117789000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117782800-117796400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:117783000-117788200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr12:117785800-117789400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:117785800-117789800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:117787400-117789400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:117787800-117788200	Flanking Active TSS	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links