Variant report

Variant	rs9658377
Chromosome Location	chr12:117710395-117710396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9658364	0.89[AFR][1000 genomes]
rs9658369	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1051681	chr12:117692761-117720185	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117660000-117727400	Weak transcription	Psoas Muscle	Psoas
2	chr12:117693800-117715200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:117695600-117718200	Weak transcription	Pancreas	Pancrea
4	chr12:117697200-117746200	Weak transcription	Brain Anterior Caudate	brain
5	chr12:117703600-117717600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:117709400-117710600	Strong transcription	Skeletal Muscle Male	skeletal muscle
7	chr12:117709400-117710600	Strong transcription	NHEK	skin
8	chr12:117710200-117711200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:117710200-117717800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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