Variant report

Variant	rs9658481
Chromosome Location	chr12:117672569-117672570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16947370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16947421	1.00[EUR][1000 genomes]
rs57657052	1.00[EUR][1000 genomes]
rs60695198	1.00[EUR][1000 genomes]
rs7960451	1.00[EUR][1000 genomes]
rs7961096	1.00[EUR][1000 genomes]
rs9658301	1.00[EUR][1000 genomes]
rs9658422	1.00[EUR][1000 genomes]
rs9658426	1.00[EUR][1000 genomes]
rs9658465	1.00[EUR][1000 genomes]
rs9658479	1.00[EUR][1000 genomes]
rs9658487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658507	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv510592	chr12:117618872-117684713	Bivalent/Poised TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117651800-117696000	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117658200-117678200	Weak transcription	Pancreas	Pancrea
3	chr12:117660000-117727400	Weak transcription	Psoas Muscle	Psoas
4	chr12:117666200-117704200	Weak transcription	Brain Angular Gyrus	brain
5	chr12:117670000-117687800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:117671200-117674200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:117671600-117672600	Strong transcription	NHEK	skin
8	chr12:117671800-117673000	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr12:117671800-117673200	Strong transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:117672000-117673000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:117672000-117673200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:117672200-117672600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:117672400-117672600	Enhancers	Spleen	Spleen
14	chr12:117672400-117674800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr12:117672400-117674800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr12:117672400-117675200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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