Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10850802	0.82[AMR][1000 genomes]
rs10850803	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12424169	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12425008	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2271986	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293045	0.87[AMR][1000 genomes]
rs4766836	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766837	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766838	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4767523	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315796	0.80[AMR][1000 genomes]
rs73206094	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73206097	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9658472	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9658490	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9658525	0.91[EUR][1000 genomes]
rs9658536	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9658546	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9658556	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9658570	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv510592	chr12:117618872-117684713	Bivalent/Poised TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117646400-117664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117651800-117696000	Weak transcription	Brain Anterior Caudate	brain
3	chr12:117652800-117662600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:117658200-117678200	Weak transcription	Pancreas	Pancrea
5	chr12:117658600-117662000	Weak transcription	Right Atrium	heart
6	chr12:117660000-117727400	Weak transcription	Psoas Muscle	Psoas
7	chr12:117660400-117667200	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:117661000-117662200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr12:117661000-117662600	Weak transcription	NHEK	skin
10	chr12:117661000-117669800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: