Variant report

Variant	rs9658542
Chromosome Location	chr12:117656295-117656296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7957789	0.80[YRI][hapmap]
rs9658416	0.85[AFR][1000 genomes]
rs9658428	0.85[AFR][1000 genomes]
rs9658456	0.83[AFR][1000 genomes]
rs9658483	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9658520	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9658574	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv510592	chr12:117618872-117684713	Bivalent/Poised TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117646400-117664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117651000-117657800	Weak transcription	Brain Substantia Nigra	brain
3	chr12:117651200-117657800	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:117651600-117660800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:117651800-117696000	Weak transcription	Brain Anterior Caudate	brain
6	chr12:117652800-117662600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:117654400-117656400	Enhancers	GM12878-XiMat	blood
8	chr12:117655600-117656600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
9	chr12:117655600-117656800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:117655600-117656800	Strong transcription	NHEK	skin
11	chr12:117655800-117656600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr12:117656200-117656400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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