Variant report

Variant	rs9659790
Chromosome Location	chr1:63165761-63165762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1168107	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1168113	0.85[EUR][1000 genomes]
rs4409689	0.85[EUR][1000 genomes]
rs6666816	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6682423	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6686331	0.84[EUR][1000 genomes]
rs880694	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9787151	0.85[EUR][1000 genomes]
rs9787156	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9659790	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63156400-63170400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:63156600-63170400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:63157400-63170400	Weak transcription	Fetal Stomach	stomach
4	chr1:63157600-63173000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:63157600-63180800	Weak transcription	Fetal Brain Male	brain
6	chr1:63157800-63167200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:63158400-63166800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:63158800-63170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:63159600-63166000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:63160400-63171000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:63160600-63166000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:63160600-63170400	Weak transcription	Fetal Intestine Small	intestine
13	chr1:63160600-63170600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:63163600-63186600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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