Variant report

Variant	rs9661107
Chromosome Location	chr1:150987886-150987887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150967937..150969769-chr1:150986462..150989877,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11204755	0.81[EUR][1000 genomes]
rs11204765	0.81[EUR][1000 genomes]
rs12068365	0.81[EUR][1000 genomes]
rs12068631	0.84[EUR][1000 genomes]
rs12070288	0.82[EUR][1000 genomes]
rs12073630	0.81[EUR][1000 genomes]
rs12074446	0.81[EUR][1000 genomes]
rs12075317	0.81[EUR][1000 genomes]
rs12078033	0.81[EUR][1000 genomes]
rs1673161	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2925740	0.81[EUR][1000 genomes]
rs3002292	0.93[EUR][1000 genomes]
rs4418603	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6695311	0.84[EUR][1000 genomes]
rs7526955	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs955955	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150981800-150997000	Weak transcription	Aorta	Aorta
2	chr1:150981800-151006400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:150982000-150990200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:150982000-150990400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:150982000-150990400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:150982000-150996800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:150982000-150997000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:150982000-150997000	Weak transcription	Esophagus	oesophagus
9	chr1:150982000-150997000	Weak transcription	Psoas Muscle	Psoas
10	chr1:150982000-150998000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:150982000-150999600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:150982000-151009000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:150982200-150990400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:150982200-150990600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:150982200-150995200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:150982200-150997200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:150982200-150997200	Weak transcription	HUVEC	blood vessel
18	chr1:150982200-150999400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:150982200-150999800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:150982200-151002800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:150982400-150988200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:150982400-150992800	Weak transcription	NHDF-Ad	bronchial
23	chr1:150982400-150995200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:150983200-150997200	Weak transcription	Thymus	Thymus
25	chr1:150983600-150990200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:150984000-150990400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:150984000-150990400	Weak transcription	Brain Hippocampus Middle	brain
28	chr1:150984000-150990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:150984000-150997000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr1:150984000-150999800	Weak transcription	Hela-S3	cervix
31	chr1:150984200-150989800	Weak transcription	Dnd41	blood
32	chr1:150984200-150990400	Weak transcription	Fetal Thymus	thymus
33	chr1:150984200-150990600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr1:150984200-150990800	Weak transcription	HSMM	muscle
35	chr1:150984200-150995200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:150984200-150997000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr1:150984200-150997000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr1:150984200-150997000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:150984200-150998800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:150984200-150999600	Weak transcription	NHEK	skin
41	chr1:150984200-151006400	Weak transcription	HMEC	breast
42	chr1:150984800-150990200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:150984800-150991000	Weak transcription	Brain Germinal Matrix	brain
44	chr1:150984800-150995400	Weak transcription	HSMMtube	muscle
45	chr1:150985000-150994200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr1:150985800-150990600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:150986000-150997000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr1:150986000-151000800	Weak transcription	A549	lung
49	chr1:150986000-151003200	Weak transcription	Fetal Brain Male	brain
50	chr1:150986200-150988200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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