Variant report
| Variant | rs9661688 |
|---|---|
| Chromosome Location | chr5:74430271-74430272 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10874125 | 0.83[AMR][1000 genomes] |
| rs10874126 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10874127 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11162997 | 0.82[ASN][1000 genomes] |
| rs11162998 | 0.90[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11162999 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11163000 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11163002 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12070702 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12077701 | 0.90[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1365754 | 0.85[AMR][1000 genomes] |
| rs1549552 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1549553 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1549555 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1549556 | 0.85[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1549557 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1896250 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1966549 | 0.86[AMR][1000 genomes] |
| rs6659187 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs951258 | 0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018865 | chr5:74246293-74494552 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv882189 | chr5:74356857-74478078 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016610 | chr5:74403611-74627654 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:74427600-74434600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
