Variant report

Variant	rs9662399
Chromosome Location	chr1:212103247-212103248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212102942..212105298-chr1:212120258..212122026,2	MCF-7	breast:
2	chr1:212089622..212092139-chr1:212102871..212105783,2	K562	blood:
3	chr1:212100825..212103790-chr1:212103837..212105355,2	K562	blood:
4	chr1:212101718..212103462-chr1:212208564..212211314,2	K562	blood:
5	chr1:212101758..212105730-chr1:212107353..212109879,3	MCF-7	breast:
6	chr1:212002995..212005657-chr1:212102494..212104285,2	K562	blood:
7	chr1:212002998..212004643-chr1:212102667..212104537,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233626	Chromatin interaction
ENSG00000123684	Chromatin interaction
ENSG00000143476	Chromatin interaction
ENSG00000143493	Chromatin interaction
ENSG00000229258	Chromatin interaction

rs_ID	r²[population]
rs1890345	1.00[YRI][hapmap]
rs9659156	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9661776	1.00[AMR][1000 genomes]
rs9662621	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212098800-212106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:212100600-212104400	Enhancers	Fetal Intestine Small	intestine
4	chr1:212100600-212104800	Enhancers	Fetal Intestine Large	intestine
5	chr1:212100600-212109000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:212100800-212103400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:212100800-212103400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:212101000-212103600	Enhancers	HMEC	breast
9	chr1:212101200-212103400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:212101400-212103600	Enhancers	Placenta	Placenta
11	chr1:212101400-212107800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:212101600-212103400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:212101600-212103400	Enhancers	Liver	Liver
14	chr1:212101600-212103400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr1:212101600-212103600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr1:212101800-212103400	Flanking Active TSS	Hela-S3	cervix
17	chr1:212101800-212103600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:212101800-212103600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:212102000-212103600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:212102000-212103600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:212102000-212106200	Weak transcription	Right Atrium	heart
22	chr1:212102000-212109000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:212102200-212103400	Enhancers	Fetal Lung	lung
24	chr1:212102200-212103400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr1:212102200-212103400	Flanking Active TSS	HepG2	liver
26	chr1:212102200-212103600	Enhancers	Esophagus	oesophagus
27	chr1:212102200-212103600	Enhancers	NHEK	skin
28	chr1:212102200-212104200	Enhancers	Lung	lung
29	chr1:212102400-212103600	Enhancers	Pancreas	Pancrea
30	chr1:212102400-212106200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:212102400-212107800	Weak transcription	Spleen	Spleen
32	chr1:212102400-212113200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:212102600-212103600	Enhancers	Stomach Mucosa	stomach
34	chr1:212102600-212104400	Weak transcription	Fetal Muscle Leg	muscle
35	chr1:212102600-212115200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:212102600-212120400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:212102800-212105800	Weak transcription	HSMMtube	muscle
38	chr1:212102800-212111400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr1:212102800-212114400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:212102800-212115000	Weak transcription	Fetal Thymus	thymus
41	chr1:212102800-212115200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:212103000-212103600	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr1:212103000-212103600	Enhancers	Duodenum Mucosa	Duodenum
44	chr1:212103000-212103600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr1:212103000-212103600	Enhancers	A549	lung
46	chr1:212103000-212104400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr1:212103000-212105000	Enhancers	K562	blood
48	chr1:212103000-212106000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr1:212103000-212107800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:212103000-212132600	Weak transcription	Gastric	stomach

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