Variant report

Variant	rs9663810
Chromosome Location	chr10:95994626-95994627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11187828	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248509	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12249757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262808	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
2	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:95984600-95995800	Weak transcription	Fetal Lung	lung
5	chr10:95984600-96000600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:95984800-96023800	Weak transcription	Pancreas	Pancrea
7	chr10:95985000-95994800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:95985000-95995000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:95985600-95995000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:95985800-96005800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
12	chr10:95986000-95994800	Weak transcription	Adipose Nuclei	Adipose
13	chr10:95986000-96011400	Weak transcription	Stomach Mucosa	stomach
14	chr10:95987000-95995000	Strong transcription	Fetal Stomach	stomach
15	chr10:95987000-95998600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:95988000-95997400	Weak transcription	Aorta	Aorta
17	chr10:95988200-96005600	Weak transcription	Fetal Brain Female	brain
18	chr10:95989400-95995600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:95989400-96005800	Weak transcription	Ovary	ovary
20	chr10:95989400-96005800	Weak transcription	Spleen	Spleen
21	chr10:95990000-95995800	Weak transcription	A549	lung
22	chr10:95990000-95997400	Strong transcription	Fetal Muscle Leg	muscle
23	chr10:95990400-95995400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:95991600-95996000	Strong transcription	Fetal Intestine Small	intestine
25	chr10:95992400-95994800	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:95992600-95996600	Strong transcription	Fetal Intestine Large	intestine
27	chr10:95992800-95997600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:95993800-95995200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr10:95993800-95995200	Strong transcription	HSMMtube	muscle
30	chr10:95994000-95995000	Strong transcription	Gastric	stomach
31	chr10:95994000-95995800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:95994000-95996000	Strong transcription	Duodenum Mucosa	Duodenum
33	chr10:95994200-95997200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:95994400-95997400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:95994600-95995200	Enhancers	Osteobl	bone
36	chr10:95994600-95996000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:95994600-96005800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:95994600-96045400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links