Variant report

Variant	rs9664174
Chromosome Location	chr10:98130407-98130408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98129908..98132885-chr10:98133498..98137488,4	K562	blood:

Variant related genes	Relation type
ENSG00000095587	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17388474	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2861575	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98117000-98134400	Weak transcription	Thymus	Thymus
2	chr10:98127400-98133800	Weak transcription	Fetal Brain Female	brain
3	chr10:98128000-98133400	Weak transcription	Right Ventricle	heart
4	chr10:98128200-98134800	Weak transcription	Left Ventricle	heart
5	chr10:98128600-98133800	Weak transcription	Brain Angular Gyrus	brain
6	chr10:98129000-98133600	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:98129600-98130600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:98129600-98130600	Enhancers	Placenta	Placenta
9	chr10:98129800-98130800	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:98130000-98130600	Flanking Active TSS	Hela-S3	cervix
11	chr10:98130000-98130800	Enhancers	Brain Anterior Caudate	brain
12	chr10:98130000-98130800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr10:98130000-98131400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:98130000-98132200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:98130200-98130600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:98130200-98130800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:98130200-98130800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr10:98130200-98130800	Enhancers	Brain Substantia Nigra	brain
19	chr10:98130200-98131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:98130200-98134400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:98130400-98130600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:98130400-98130600	Bivalent Enhancer	Adipose Nuclei	Adipose
23	chr10:98130400-98130600	Active TSS	Duodenum Mucosa	Duodenum
24	chr10:98130400-98130600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:98130400-98130600	Enhancers	A549	lung
26	chr10:98130400-98130800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:98130400-98130800	Enhancers	Dnd41	blood
28	chr10:98130400-98131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:98130400-98134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:98130400-98134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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