Variant report

Variant	rs9665344
Chromosome Location	chr10:98784380-98784381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98346758..98349089-chr10:98783035..98785459,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11188985	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs7896883	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7922865	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98777600-98791000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:98778000-98797200	Strong transcription	Fetal Thymus	thymus
3	chr10:98778800-98794400	Weak transcription	Thymus	Thymus
4	chr10:98779000-98784400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:98780600-98785200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:98781000-98785200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:98781200-98785200	Weak transcription	Aorta	Aorta
8	chr10:98781200-98785200	Weak transcription	Left Ventricle	heart
9	chr10:98781200-98785400	Weak transcription	Brain Substantia Nigra	brain
10	chr10:98781200-98785800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:98781200-98788400	Weak transcription	Brain Germinal Matrix	brain
12	chr10:98781200-98789600	Weak transcription	Brain Anterior Caudate	brain
13	chr10:98781200-98790400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:98781200-98790600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:98781200-98791800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:98781200-98792800	Weak transcription	Fetal Brain Male	brain
17	chr10:98781200-98794200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:98781200-98797000	Weak transcription	Gastric	stomach
19	chr10:98782000-98785200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:98782000-98785200	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:98782000-98785200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:98782000-98785200	Weak transcription	Psoas Muscle	Psoas
23	chr10:98782000-98792400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:98782200-98785200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:98782600-98785200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:98782600-98789600	Weak transcription	Fetal Brain Female	brain
27	chr10:98782800-98784800	Enhancers	Fetal Muscle Trunk	muscle
28	chr10:98783200-98784400	Enhancers	Primary hematopoietic stem cells	blood
29	chr10:98783200-98784400	Enhancers	Fetal Intestine Small	intestine
30	chr10:98783200-98784600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr10:98783200-98784600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:98783200-98785000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:98783200-98785400	Enhancers	HepG2	liver
34	chr10:98783400-98785600	Enhancers	Adipose Nuclei	Adipose
35	chr10:98783600-98784400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:98783600-98784400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:98783600-98784400	Enhancers	Colon Smooth Muscle	Colon
38	chr10:98783600-98784400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:98783600-98784400	Flanking Active TSS	HUVEC	blood vessel
40	chr10:98783600-98784400	Enhancers	NHEK	skin
41	chr10:98783600-98784400	Flanking Active TSS	Osteobl	bone
42	chr10:98783600-98784600	Flanking Active TSS	A549	lung
43	chr10:98783600-98784800	Enhancers	Ovary	ovary
44	chr10:98783600-98785400	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr10:98783800-98784400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:98783800-98784400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:98783800-98784400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:98783800-98784400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr10:98783800-98784400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:98783800-98784400	Flanking Active TSS	Stomach Smooth Muscle	stomach

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