Variant report

Variant	rs9665965
Chromosome Location	chr11:16448388-16448389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10766320	0.84[EUR][1000 genomes]
rs10766321	0.84[EUR][1000 genomes]
rs10766323	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832598	0.82[EUR][1000 genomes]
rs10832599	0.84[EUR][1000 genomes]
rs10832605	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832606	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832608	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023944	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023945	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11820804	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12277548	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12800228	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1503447	0.85[ASN][1000 genomes]
rs1875717	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1910406	0.85[ASN][1000 genomes]
rs2134609	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs297333	0.80[EUR][1000 genomes]
rs297339	0.82[EUR][1000 genomes]
rs61881798	0.83[ASN][1000 genomes]
rs7121140	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7925322	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7929425	0.84[EUR][1000 genomes]
rs7929629	0.87[EUR][1000 genomes]
rs7932314	0.84[EUR][1000 genomes]
rs7942989	0.84[EUR][1000 genomes]
rs7945277	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7951214	0.84[EUR][1000 genomes]
rs957476	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16443800-16450800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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