Variant report

Variant	rs966619
Chromosome Location	chr3:80737420-80737421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1320910	0.82[EUR][1000 genomes]
rs1437046	0.82[EUR][1000 genomes]
rs1520589	0.85[EUR][1000 genomes]
rs1520590	0.84[EUR][1000 genomes]
rs2139685	0.85[EUR][1000 genomes]
rs28490262	0.84[EUR][1000 genomes]
rs4270470	0.81[EUR][1000 genomes]
rs500298	0.87[EUR][1000 genomes]
rs528897	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs571776	0.86[EUR][1000 genomes]
rs584597	0.86[EUR][1000 genomes]
rs588001	0.83[EUR][1000 genomes]
rs613707	0.86[EUR][1000 genomes]
rs619305	0.82[EUR][1000 genomes]
rs62258009	0.83[EUR][1000 genomes]
rs627529	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs704464	0.82[EUR][1000 genomes]
rs7617921	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs878245	0.83[EUR][1000 genomes]
rs9818650	0.85[EUR][1000 genomes]
rs9832758	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997720	chr3:80035786-80745662	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv877037	chr3:80611818-80811252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80735400-80737800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:80737400-80737800	Enhancers	Fetal Brain Male	brain

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