Variant report

Variant	rs9666440
Chromosome Location	chr11:73662363-73662364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11235911	0.83[EUR][1000 genomes]
rs11235918	0.83[EUR][1000 genomes]
rs11235928	0.84[EUR][1000 genomes]
rs11235950	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235951	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11534587	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758932	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3758933	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56307666	0.84[EUR][1000 genomes]
rs59187119	0.83[EUR][1000 genomes]
rs66465726	0.83[EUR][1000 genomes]
rs7104794	0.84[EUR][1000 genomes]
rs7130191	0.83[EUR][1000 genomes]
rs72982946	0.94[ASN][1000 genomes]
rs72982956	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72982960	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989263	0.83[EUR][1000 genomes]
rs7927396	0.92[EUR][1000 genomes]
rs7931143	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9666440	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
3	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:73660600-73667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:73661800-73662600	Flanking Active TSS	HepG2	liver
8	chr11:73662000-73662400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:73662000-73662400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:73662000-73662400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:73662000-73662400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:73662000-73662400	Enhancers	Fetal Lung	lung
13	chr11:73662000-73663400	Active TSS	Brain Anterior Caudate	brain
14	chr11:73662000-73663600	Enhancers	Fetal Kidney	kidney
15	chr11:73662000-73663800	Enhancers	HSMM	muscle
16	chr11:73662000-73664000	Enhancers	HSMMtube	muscle
17	chr11:73662200-73662400	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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