Variant report

Variant	rs9666757
Chromosome Location	chr11:108431207-108431208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108430808..108434301-chr11:108434645..108436882,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17108182	1.00[EUR][1000 genomes]
rs1893996	1.00[EUR][1000 genomes]
rs1893997	1.00[EUR][1000 genomes]
rs3092837	1.00[EUR][1000 genomes]
rs7103368	1.00[EUR][1000 genomes]
rs7938338	1.00[EUR][1000 genomes]
rs7945405	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108417200-108441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:108422400-108441600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:108423000-108436000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:108423400-108432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:108423400-108432400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:108423400-108436000	Weak transcription	Liver	Liver
7	chr11:108423600-108441400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:108423800-108432200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:108424200-108439400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:108426400-108432600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:108427800-108432200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:108428600-108442000	Weak transcription	K562	blood
13	chr11:108429000-108432400	Enhancers	HSMMtube	muscle
14	chr11:108429200-108434600	Enhancers	HSMM	muscle
15	chr11:108429600-108432200	Weak transcription	Aorta	Aorta
16	chr11:108430000-108432400	Enhancers	NH-A	brain
17	chr11:108430200-108431400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:108430400-108431600	Enhancers	Fetal Kidney	kidney
19	chr11:108430400-108432200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:108430400-108432600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:108430400-108436600	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:108430600-108431400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:108430600-108432200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:108430800-108431400	Strong transcription	NHEK	skin
25	chr11:108430800-108431400	Flanking Active TSS	NHLF	lung
26	chr11:108430800-108432200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:108430800-108432400	Enhancers	NHDF-Ad	bronchial
28	chr11:108430800-108433400	Weak transcription	GM12878-XiMat	blood
29	chr11:108431000-108431400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:108431000-108431400	Strong transcription	Placenta	Placenta
31	chr11:108431000-108432200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:108431000-108432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:108431000-108432200	Weak transcription	Ovary	ovary
34	chr11:108431000-108433200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:108431000-108434000	Weak transcription	Gastric	stomach
36	chr11:108431000-108434400	Enhancers	Osteobl	bone
37	chr11:108431000-108434600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:108431000-108436200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:108431200-108432200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:108431200-108432200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:108431200-108432200	Weak transcription	Adipose Nuclei	Adipose
42	chr11:108431200-108432200	Weak transcription	Fetal Lung	lung
43	chr11:108431200-108432200	Weak transcription	HMEC	breast
44	chr11:108431200-108434400	Enhancers	Muscle Satellite Cultured Cells	--

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