Variant report

Variant	rs9668141
Chromosome Location	chr12:8549385-8549386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr12:8549246-8549463	A549	lung:	n/a	chr12:8549399-8549411 chr12:8549400-8549413 chr12:8549397-8549416 chr12:8549401-8549415
2	REST	chr12:8549367-8549583	PANC-1	pancreas:	n/a	chr12:8549483-8549492 chr12:8549519-8549532 chr12:8549444-8549457
3	CTCF	chr12:8549320-8549470	HUVEC	blood vessel:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
4	CTCF	chr12:8549360-8549510	HMEC	breast:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
5	CTCF	chr12:8549360-8549510	HCT-116	colon:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
6	CTCF	chr12:8549281-8549590	Fibrobl	skin:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
7	CTCF	chr12:8549360-8549510	AG09319	gingival:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
8	TEAD4	chr12:8549385-8549652	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr12:8549262-8549599	GM19240	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
10	CTCF	chr12:8549283-8549575	Pancreas_OC	pancreas:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
11	TCF12	chr12:8549330-8549501	GM12878	blood:	n/a	n/a
12	BACH1	chr12:8549275-8549403	H1-hESC	embryonic stem cell:	n/a	n/a
13	SMC3	chr12:8549271-8549563	Hela-S3	cervix:	n/a	chr12:8549401-8549415
14	NRF1	chr12:8549173-8549674	SK-N-SH	brain:	n/a	chr12:8549281-8549290
15	JUND	chr12:8549369-8549432	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr12:8549340-8549490	HA-sp	spinal cord:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
17	CTCF	chr12:8549262-8549598	Spleen_OC	spleen:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
18	PAX5	chr12:8549304-8549596	GM12878	blood:	n/a	n/a
19	YY1	chr12:8549317-8549592	H1-hESC	embryonic stem cell:	n/a	chr12:8549361-8549375 chr12:8549361-8549370 chr12:8549358-8549372
20	CTCF	chr12:8549234-8549613	K562	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
21	RAD21	chr12:8549243-8549636	H1-hESC	embryonic stem cell:	n/a	chr12:8549399-8549411 chr12:8549400-8549413 chr12:8549397-8549416 chr12:8549401-8549415
22	CTCF	chr12:8549328-8549541	HepG2	liver:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
23	TCF12	chr12:8549209-8549603	GM12878	blood:	n/a	n/a
24	REST	chr12:8549330-8549569	H1-hESC	embryonic stem cell:	n/a	chr12:8549483-8549492 chr12:8549519-8549532 chr12:8549444-8549457
25	YY1	chr12:8549277-8549537	GM12878	blood:	n/a	chr12:8549361-8549375 chr12:8549278-8549292 chr12:8549361-8549370 chr12:8549358-8549372
26	CTCF	chr12:8549320-8549470	AG04449	skin:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
27	CTCF	chr12:8549281-8549616	GM19239	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
28	CTCF	chr12:8549380-8549530	WERI-Rb-1	eye:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
29	CTCF	chr12:8549205-8549871	A549	lung:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
30	JUND	chr12:8549253-8549565	A549	lung:	n/a	n/a
31	CTCF	chr12:8549225-8549618	IMR90	lung:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
32	RAD21	chr12:8549231-8549516	HepG2	liver:	n/a	chr12:8549399-8549411 chr12:8549400-8549413 chr12:8549397-8549416 chr12:8549401-8549415
33	CTCF	chr12:8549360-8549510	GM12870	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
34	MYC	chr12:8549288-8549486	MCF10A-Er-Src	breast:	n/a	n/a
35	CTCF	chr12:8549380-8549530	GM06990	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
36	CTCF	chr12:8549283-8549582	GM10266	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
37	RAD21	chr12:8549074-8549650	SK-N-SH	brain:	n/a	chr12:8549399-8549411 chr12:8549400-8549413 chr12:8549397-8549416 chr12:8549401-8549415
38	CTCF	chr12:8549320-8549470	SK-N-SH_RA	brain:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
39	RAD21	chr12:8549233-8549558	IMR90	lung:	n/a	chr12:8549399-8549411 chr12:8549400-8549413 chr12:8549397-8549416 chr12:8549401-8549415
40	CTCF	chr12:8549380-8549530	HUVEC	blood vessel:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
41	CTCF	chr12:8549320-8549470	WI-38	lung:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
42	RAD21	chr12:8549193-8549565	HepG2	liver:	n/a	chr12:8549399-8549411 chr12:8549400-8549413 chr12:8549397-8549416 chr12:8549401-8549415
43	SMC3	chr12:8549256-8549543	K562	blood:	n/a	chr12:8549401-8549415
44	POLR2A	chr12:8549385-8549423	HUVEC	blood vessel:	n/a	n/a
45	CTCF	chr12:8549380-8549530	GM12878	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
46	CTCF	chr12:8549228-8549561	HepG2	liver:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
47	CTCF	chr12:8549300-8549591	MCF-7	breast:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
48	CTCF	chr12:8549185-8549759	K562	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
49	CTCF	chr12:8549297-8549581	GM13976	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414
50	CTCF	chr12:8549360-8549510	GM12865	blood:	n/a	chr12:8549394-8549415 chr12:8549399-8549417 chr12:8549401-8549414 chr12:8549400-8549416 chr12:8549401-8549414

Variant related genes	Relation type
LINC00937	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10770621	0.89[EUR][1000 genomes]
rs10770622	0.89[EUR][1000 genomes]
rs10770629	0.82[EUR][1000 genomes]
rs10841475	0.83[EUR][1000 genomes]
rs11524938	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4077434	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4306346	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4378465	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4469973	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71438282	0.83[EUR][1000 genomes]
rs7956140	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7974295	0.83[EUR][1000 genomes]
rs9669006	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9705552	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048545	chr12:7778760-8608231	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv541368	chr12:7778760-8608231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	esv2758292	chr12:7856819-8623987	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
4	esv2759877	chr12:7856819-8623987	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv428270	chr12:7856819-8623987	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	esv1793572	chr12:7995827-8568422	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv916941	chr12:8003501-8608220	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
8	nsv1040302	chr12:8245364-8695612	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv541397	chr12:8245364-8695612	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv427902	chr12:8276546-8623987	Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	esv2757488	chr12:8280755-8580804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv1799331	chr12:8308073-8568222	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv1040962	chr12:8317823-8584660	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv1036525	chr12:8317823-8603777	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv557332	chr12:8321048-8598823	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv557333	chr12:8321048-8599397	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
17	esv16224	chr12:8323225-8589822	Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
18	nsv1036867	chr12:8329500-8581129	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	esv1804506	chr12:8333011-8561680	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv1050342	chr12:8334885-8581129	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv1048534	chr12:8334885-8584660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	esv1816305	chr12:8343961-8584660	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv1040012	chr12:8357507-8584660	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
24	esv2760766	chr12:8357507-8584672	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
25	nsv898733	chr12:8357507-8600363	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
26	esv1848469	chr12:8361724-8589775	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
27	nsv1050188	chr12:8362038-8581129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
28	nsv1050955	chr12:8362038-8584660	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	nsv898734	chr12:8367694-8568358	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv1043700	chr12:8370702-8584660	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv1054161	chr12:8371320-8584660	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
32	nsv973015	chr12:8371568-8602961	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
33	nsv1050081	chr12:8378239-8584660	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
34	nsv1039971	chr12:8393816-8584660	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
35	nsv1052610	chr12:8401834-8584660	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
36	nsv1046231	chr12:8401834-8603777	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1047103	chr12:8412050-8562623	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
38	nsv1043254	chr12:8412050-8581129	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
39	nsv1054850	chr12:8412050-8584660	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
40	nsv1042364	chr12:8417967-8605829	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
41	nsv1044464	chr12:8428423-8581129	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
42	nsv1046598	chr12:8428423-8584660	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
43	nsv1041859	chr12:8436238-8584660	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
44	nsv1037314	chr12:8449100-8584660	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
45	nsv1044543	chr12:8449100-8792569	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
46	nsv508664	chr12:8450876-8604691	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv1035313	chr12:8468557-8584660	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
48	nsv898735	chr12:8479342-8568358	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
49	nsv898736	chr12:8479342-8605216	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
50	nsv1039504	chr12:8494944-8780137	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8548200-8549400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr12:8548400-8549400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr12:8548400-8549400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr12:8548400-8549400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr12:8548400-8549400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:8548400-8549400	Active TSS	Primary hematopoietic stem cells	blood
7	chr12:8548600-8549400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr12:8548600-8549400	Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr12:8548600-8549600	Active TSS	Fetal Brain Female	brain
10	chr12:8548800-8549400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:8548800-8549400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:8548800-8549400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:8548800-8549400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr12:8548800-8549400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:8548800-8549400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:8548800-8549400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr12:8548800-8549400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:8548800-8549400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:8548800-8549400	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr12:8548800-8549400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr12:8548800-8549400	Active TSS	Right Atrium	heart
22	chr12:8548800-8549400	Active TSS	Right Ventricle	heart
23	chr12:8548800-8549400	Active TSS	Thymus	Thymus
24	chr12:8548800-8549400	Active TSS	NHLF	lung
25	chr12:8548800-8549600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
26	chr12:8548800-8549600	Enhancers	Primary B cells from cord blood	blood
27	chr12:8548800-8549600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr12:8548800-8549600	Enhancers	Esophagus	oesophagus
29	chr12:8549000-8549400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr12:8549000-8549400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr12:8549000-8549400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:8549000-8549400	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr12:8549000-8549400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr12:8549000-8549400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr12:8549000-8549400	Active TSS	Primary T cells from cord blood	blood
36	chr12:8549000-8549400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
37	chr12:8549000-8549400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr12:8549000-8549400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:8549000-8549400	Active TSS	Muscle Satellite Cultured Cells	--
40	chr12:8549000-8549400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr12:8549000-8549400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr12:8549000-8549400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr12:8549000-8549400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr12:8549000-8549400	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr12:8549000-8549400	Active TSS	Aorta	Aorta
46	chr12:8549000-8549400	Active TSS	Brain Anterior Caudate	brain
47	chr12:8549000-8549400	Active TSS	Brain Cingulate Gyrus	brain
48	chr12:8549000-8549400	Active TSS	Brain Substantia Nigra	brain
49	chr12:8549000-8549400	Active TSS	Colonic Mucosa	Colon
50	chr12:8549000-8549400	Flanking Active TSS	Pancreas	Pancrea

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