Variant report

Variant	rs9668434
Chromosome Location	chr12:64318733-64318734
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64305250..64307387-chr12:64317029..64319584,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10437967	0.90[ASN][1000 genomes]
rs10784373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10784374	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10878094	0.94[ASN][1000 genomes]
rs11175208	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12230334	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911399	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3911400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7965316	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7973936	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832442	chr12:64228071-64442771	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64298800-64334000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:64310200-64319600	Weak transcription	Right Ventricle	heart
3	chr12:64312200-64324200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:64312400-64331600	Weak transcription	Right Atrium	heart
5	chr12:64312400-64385000	Weak transcription	Aorta	Aorta
6	chr12:64312800-64318800	Weak transcription	Brain Anterior Caudate	brain
7	chr12:64312800-64324200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:64312800-64324600	Weak transcription	Fetal Lung	lung
9	chr12:64312800-64331200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:64312800-64331400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr12:64313000-64334400	Weak transcription	Psoas Muscle	Psoas
12	chr12:64313200-64321000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:64313200-64330600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:64313200-64331600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:64313200-64331600	Weak transcription	Left Ventricle	heart
16	chr12:64313200-64334400	Weak transcription	Pancreas	Pancrea
17	chr12:64313400-64318800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr12:64313800-64319200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr12:64313800-64321000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr12:64314200-64321000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr12:64314200-64331200	Weak transcription	Brain Substantia Nigra	brain
22	chr12:64316600-64318800	Weak transcription	Fetal Heart	heart
23	chr12:64316600-64322200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:64316600-64338400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:64316800-64322200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:64316800-64322600	Weak transcription	HSMM	muscle
27	chr12:64316800-64322800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr12:64316800-64322800	Weak transcription	NHLF	lung
29	chr12:64317000-64320800	Weak transcription	A549	lung
30	chr12:64317000-64321600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:64317000-64322600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:64317000-64322600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:64317000-64322800	Weak transcription	HMEC	breast
34	chr12:64317000-64324600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr12:64317000-64324800	Weak transcription	HSMMtube	muscle
36	chr12:64317200-64322600	Weak transcription	NHEK	skin
37	chr12:64317200-64327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr12:64317800-64321200	Enhancers	Fetal Brain Male	brain
39	chr12:64318000-64319000	Enhancers	NHDF-Ad	bronchial
40	chr12:64318400-64318800	Flanking Active TSS	Fetal Brain Female	brain
41	chr12:64318400-64318800	Enhancers	Osteobl	bone
42	chr12:64318400-64319000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr12:64318400-64319000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr12:64318400-64319000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr12:64318600-64319000	Enhancers	H9 Cell Line	embryonic stem cell
46	chr12:64318600-64320800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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