Variant report

Variant	rs9669023
Chromosome Location	chr12:64989094-64989095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12299132	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1048199	chr12:64951666-65021700	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	nsv541512	chr12:64951666-65021700	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv832444	chr12:64981484-65168472	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64978200-64992200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr12:64979200-64989200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:64984400-64989200	Weak transcription	HepG2	liver
4	chr12:64985600-64994200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:64988200-64989200	Active TSS	Primary B cells from cord blood	blood
6	chr12:64988400-64989600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:64988400-64990400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:64988400-64990600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr12:64988400-64991200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr12:64988400-64992800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr12:64988600-64989200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:64988600-64989600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr12:64988600-64990200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:64988600-64990400	Enhancers	Primary T cells from cord blood	blood
15	chr12:64988600-64990400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr12:64988600-64992800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr12:64988800-64989200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr12:64988800-64994000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr12:64989000-64990400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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