Variant report

Variant	rs9669207
Chromosome Location	chr12:105200592-105200593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1155994	0.82[ASN][1000 genomes]
rs1389612	0.82[ASN][1000 genomes]
rs2248012	0.82[ASN][1000 genomes]
rs2453160	0.81[ASN][1000 genomes]
rs2453166	0.82[ASN][1000 genomes]
rs2468092	0.82[ASN][1000 genomes]
rs2468099	0.81[ASN][1000 genomes]
rs2468100	0.81[ASN][1000 genomes]
rs2468105	0.81[ASN][1000 genomes]
rs2468340	0.81[ASN][1000 genomes]
rs6539170	0.80[ASN][1000 genomes]
rs7980681	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899497	chr12:105155291-105247010	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9669207	CHST11	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105187400-105213600	Weak transcription	Pancreas	Pancrea
2	chr12:105189800-105213400	Weak transcription	Aorta	Aorta
3	chr12:105190000-105202800	Weak transcription	Liver	Liver
4	chr12:105197600-105218400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr12:105199200-105209800	Weak transcription	HSMMtube	muscle
6	chr12:105199400-105202800	Weak transcription	NHEK	skin
7	chr12:105199400-105203000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:105199600-105202800	Weak transcription	HMEC	breast
9	chr12:105199600-105203000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:105199600-105210400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:105199800-105218800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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