Variant report

Variant	rs966935
Chromosome Location	chr10:4419830-4419831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1028838	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10904240	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10904246	0.88[CHB][hapmap]
rs1547179	0.80[CEU][hapmap];0.83[GIH][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs1679448	0.83[GIH][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap]
rs1679449	0.83[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs1751312	0.83[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs1926803	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1926814	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2148606	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601839	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7894528	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7906485	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894786	chr10:4385379-4441989	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs966935	AKR1C3	cis	parietal	SCAN
rs966935	GDI2	cis	cerebellum	SCAN
rs966935	FCGBP	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4416200-4424000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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