Variant report

Variant	rs9669400
Chromosome Location	chr12:43270879-43270880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10880377	0.83[AFR][1000 genomes]
rs10880379	0.89[AFR][1000 genomes]
rs11181748	0.85[AFR][1000 genomes]
rs11181749	0.85[AFR][1000 genomes]
rs11181761	0.89[AFR][1000 genomes]
rs1520834	0.83[AFR][1000 genomes]
rs17092157	1.00[EUR][1000 genomes]
rs17092181	1.00[EUR][1000 genomes]
rs17092182	1.00[EUR][1000 genomes]
rs17092198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092409	1.00[EUR][1000 genomes]
rs2678127	1.00[EUR][1000 genomes]
rs2730978	1.00[EUR][1000 genomes]
rs2730987	1.00[EUR][1000 genomes]
rs2730988	1.00[EUR][1000 genomes]
rs2730990	1.00[EUR][1000 genomes]
rs2730992	1.00[EUR][1000 genomes]
rs4290298	1.00[EUR][1000 genomes]
rs4489809	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56414128	1.00[EUR][1000 genomes]
rs57321993	1.00[EUR][1000 genomes]
rs57749694	0.81[AFR][1000 genomes]
rs58227715	0.89[AMR][1000 genomes]
rs58459936	1.00[EUR][1000 genomes]
rs58787047	1.00[EUR][1000 genomes]
rs60503234	0.89[AMR][1000 genomes]
rs74080157	1.00[EUR][1000 genomes]
rs74080160	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv558749	chr12:43180190-43275097	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43262600-43287600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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