Variant report

Variant	rs9669642
Chromosome Location	chr12:29859812-29859813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29854564..29857428-chr12:29857524..29860543,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10771571	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs302366	0.82[JPT][hapmap]
rs57697154	0.88[EUR][1000 genomes]
rs60702537	0.83[EUR][1000 genomes]
rs61801	0.92[JPT][hapmap]
rs6487844	0.88[EUR][1000 genomes]
rs7312849	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29830000-29861600	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:29830800-29862600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:29837600-29864200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr12:29852200-29862200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:29852200-29862200	Weak transcription	HMEC	breast
6	chr12:29852400-29862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:29853400-29864000	Weak transcription	Hela-S3	cervix
8	chr12:29854400-29860600	Weak transcription	Adipose Nuclei	Adipose
9	chr12:29854400-29866000	Weak transcription	HSMMtube	muscle
10	chr12:29854400-29879000	Weak transcription	Ovary	ovary
11	chr12:29854600-29862600	Weak transcription	Brain Anterior Caudate	brain
12	chr12:29854600-29863000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr12:29854800-29860400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:29854800-29860400	Weak transcription	Fetal Kidney	kidney
15	chr12:29855600-29862800	Weak transcription	Aorta	Aorta
16	chr12:29855600-29878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:29855800-29891200	Weak transcription	NHLF	lung
18	chr12:29856800-29860800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:29857400-29860800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:29857800-29862000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr12:29858000-29860200	Enhancers	Colon Smooth Muscle	Colon
22	chr12:29858000-29860200	Enhancers	Stomach Smooth Muscle	stomach
23	chr12:29858200-29860400	Enhancers	Left Ventricle	heart
24	chr12:29858200-29862000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:29858200-29862800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:29858200-29863000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:29858200-29863000	Weak transcription	HSMM	muscle
28	chr12:29858400-29860200	Enhancers	Fetal Stomach	stomach
29	chr12:29858400-29860200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr12:29858400-29862600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:29858600-29862800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr12:29859000-29862600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr12:29859000-29864600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr12:29859200-29860200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr12:29859200-29860200	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr12:29859200-29862600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr12:29859200-29862800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr12:29859200-29862800	Weak transcription	Right Ventricle	heart
39	chr12:29859200-29863200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:29859200-29867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr12:29859400-29861400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr12:29859400-29861600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:29859400-29861800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr12:29859400-29862600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:29859400-29862600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:29859600-29861400	Weak transcription	Fetal Brain Female	brain
47	chr12:29859600-29862800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr12:29859600-29862800	Weak transcription	Brain Germinal Matrix	brain
49	chr12:29859600-29862800	Weak transcription	Brain Substantia Nigra	brain
50	chr12:29859800-29861000	Enhancers	Psoas Muscle	Psoas

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