Variant report

Variant	rs966965
Chromosome Location	chr5:43675515-43675516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35313525	1.00[GIH][hapmap]
rs6895866	1.00[GIH][hapmap]
rs73751742	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881017	chr5:43444826-43731692	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	222 gene(s)	inside rSNPs	diseases
2	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43650200-43685400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:43650800-43676200	Weak transcription	Brain Anterior Caudate	brain
3	chr5:43653000-43675600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:43657600-43676200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:43657600-43695200	Weak transcription	K562	blood
6	chr5:43659400-43696800	Weak transcription	Gastric	stomach
7	chr5:43659600-43678200	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:43659600-43680400	Weak transcription	Psoas Muscle	Psoas
9	chr5:43659600-43706200	Weak transcription	Small Intestine	intestine
10	chr5:43659600-43710000	Weak transcription	Ovary	ovary
11	chr5:43660000-43685600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:43660200-43684800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:43661000-43675600	Weak transcription	Primary T cells from cord blood	blood
14	chr5:43661000-43675600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:43661000-43675600	Weak transcription	Fetal Kidney	kidney
16	chr5:43661000-43675600	Weak transcription	Left Ventricle	heart
17	chr5:43661000-43676200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:43661000-43677000	Weak transcription	Brain Angular Gyrus	brain
19	chr5:43661000-43677000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:43661000-43680400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr5:43661000-43680400	Weak transcription	Brain Substantia Nigra	brain
22	chr5:43661000-43680400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr5:43661000-43680400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:43661000-43680400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr5:43661000-43680600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr5:43661000-43682400	Weak transcription	Fetal Muscle Leg	muscle
27	chr5:43661000-43682600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr5:43661000-43683200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:43661000-43695600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr5:43661000-43702800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr5:43661000-43711400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:43661200-43678400	Weak transcription	HUVEC	blood vessel
33	chr5:43661600-43675600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:43664000-43676200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:43664600-43675800	Weak transcription	Liver	Liver
36	chr5:43664800-43699800	Weak transcription	Colon Smooth Muscle	Colon
37	chr5:43665200-43675600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr5:43665200-43676000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:43665200-43688600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr5:43665200-43690400	Weak transcription	Fetal Lung	lung
41	chr5:43665200-43702400	Weak transcription	Fetal Heart	heart
42	chr5:43666400-43675600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr5:43666400-43676600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:43666600-43676200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:43666600-43677200	Weak transcription	Aorta	Aorta
46	chr5:43666800-43680400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr5:43666800-43696600	Weak transcription	Spleen	Spleen
48	chr5:43667000-43676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr5:43667000-43676200	Weak transcription	Fetal Thymus	thymus
50	chr5:43667000-43677800	Weak transcription	Primary T cells fromperipheralblood	blood

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