Variant report

Variant	rs9669688
Chromosome Location	chr12:105204336-105204337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17036430	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56172532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56302664	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56745471	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56747454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56784841	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57845641	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59027081	1.00[AMR][1000 genomes]
rs59568349	1.00[AMR][1000 genomes]
rs59751889	1.00[AMR][1000 genomes]
rs61274096	1.00[AMR][1000 genomes]
rs7300539	1.00[AMR][1000 genomes]
rs7305882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7980760	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899497	chr12:105155291-105247010	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105187400-105213600	Weak transcription	Pancreas	Pancrea
2	chr12:105189800-105213400	Weak transcription	Aorta	Aorta
3	chr12:105197600-105218400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:105199200-105209800	Weak transcription	HSMMtube	muscle
5	chr12:105199600-105210400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:105199800-105218800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:105201200-105218200	Weak transcription	Gastric	stomach
8	chr12:105201400-105220600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr12:105201600-105210400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr12:105202800-105206600	Strong transcription	Liver	Liver
11	chr12:105203400-105204600	Enhancers	Primary B cells from peripheral blood	blood
12	chr12:105204000-105206400	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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