Variant report

Variant	rs9673817
Chromosome Location	chr16:46966481-46966482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs8046760	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs8053236	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1066048	chr16:46500740-46998694	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv542908	chr16:46500740-46998694	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv1059147	chr16:46500740-47010960	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv542909	chr16:46500740-47010960	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	esv1799095	chr16:46916670-46972671	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1063660	chr16:46930623-46978792	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46930800-46968400	Weak transcription	Right Atrium	heart
2	chr16:46951800-46966800	Weak transcription	Fetal Brain Male	brain
3	chr16:46955600-46966600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr16:46956200-46966800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:46961800-46966600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr16:46961800-46988600	Weak transcription	Hela-S3	cervix
7	chr16:46963200-46966600	Weak transcription	HSMMtube	muscle
8	chr16:46963400-46966800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr16:46963400-46966800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:46963400-46966800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr16:46963400-46969200	Weak transcription	Aorta	Aorta
12	chr16:46964000-46967200	Weak transcription	Brain Anterior Caudate	brain
13	chr16:46964000-46970800	Weak transcription	K562	blood
14	chr16:46964200-46966800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr16:46964200-46966800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr16:46964200-46966800	Weak transcription	Brain Hippocampus Middle	brain
17	chr16:46964200-46966800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr16:46964200-46967000	Weak transcription	Brain Angular Gyrus	brain
19	chr16:46964200-46967000	Weak transcription	NHEK	skin
20	chr16:46964200-46967200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr16:46964200-46967200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr16:46964200-46967400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr16:46964200-46976800	Weak transcription	Placenta	Placenta
24	chr16:46964200-46990600	Weak transcription	Spleen	Spleen
25	chr16:46964200-46991800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr16:46964400-46966800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr16:46964600-46966800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr16:46964600-46970200	Weak transcription	Gastric	stomach
29	chr16:46964600-46988600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr16:46964800-46988000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr16:46965000-46966600	Weak transcription	HepG2	liver
32	chr16:46965000-46966600	Weak transcription	HSMM	muscle
33	chr16:46965000-46967000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr16:46965000-46967000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr16:46965000-46990600	Weak transcription	Esophagus	oesophagus
36	chr16:46965200-46966800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr16:46965200-46966800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr16:46965200-46966800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr16:46965200-46966800	Weak transcription	Fetal Stomach	stomach
40	chr16:46965200-46967000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr16:46965200-46967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr16:46965200-46967000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr16:46965200-46967200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:46965200-46967200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr16:46965200-46967200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr16:46965200-46967200	Weak transcription	Liver	Liver
47	chr16:46965200-46967200	Weak transcription	Brain Substantia Nigra	brain
48	chr16:46965200-46967400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr16:46965200-46967600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr16:46965200-46968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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